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Structure paper

TitleStructural divergence of H2A.Z-associated human chromatin remodelers SRCAP and TIP60
Journal, issue, pagesTo Be Published
Publish dateJun 17, 2024 (structure data deposition date)
AuthorsPark G / Patel AB / Wu C / Louder RK
External linksSearch PubMed
MethodsEM (single particle)
Resolution2.3 - 7.2 Å
Structure data

45381

9ca7

EMDB-45381, PDB-9ca7:
Cryo-EM structure of human SRCAP-nucleosome complex in the fully-engaged state (composite structure)
Method: EM (single particle) / Resolution: 3.35 Å

45382

9ca8

EMDB-45382, PDB-9ca8:
Cryo-EM structure of human SRCAP-nucleosome complex in the partially-engaged state (composite structure)
Method: EM (single particle) / Resolution: 3.92 Å

45383

9ca9

EMDB-45383, PDB-9ca9:
Cryo-EM structure of the human SRCAP complex in the unbound state (composite structure)
Method: EM (single particle) / Resolution: 3.56 Å

45384

9caa

EMDB-45384, PDB-9caa:
Cryo-EM structure of human SRCAP-nucleosome complex in the pre-engaged state (composite structure)
Method: EM (single particle) / Resolution: 4.04 Å

45385

9cab

EMDB-45385, PDB-9cab:
Cryo-EM structure of human SRCAP-nucleosome complex in the encounter state (composite structure)
Method: EM (single particle) / Resolution: 3.94 Å

45386

9cac

EMDB-45386, PDB-9cac:
Cryo-EM structure of the RuvBL lobe of the native human TIP60 complex (composite structure)
Method: EM (single particle) / Resolution: 3.43 Å

45387

9cad

EMDB-45387, PDB-9cad:
Cryo-EM structure of the TRRAP lobe of the native human TIP60 complex (composite structure)
Method: EM (single particle) / Resolution: 3.05 Å

45388

9cae

EMDB-45388, PDB-9cae:
Cryo-EM structure of the reconstituted RuvBL lobe of the human TIP60 complex (composite structure)
Method: EM (single particle) / Resolution: 3.07 Å

45389

9caf

EMDB-45389, PDB-9caf:
Cryo-EM structure of the reconstituted TRRAP lobe of the human TIP60 complex (composite structure)
Method: EM (single particle) / Resolution: 2.35 Å

EMDB-49770: Cryo-EM structure of human SRCAP-nucleosome complex in the fully-engaged state (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-49771: RuvBL core from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 2.6 Å

EMDB-49772: ARP6-ZNHIT1 module from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-49773: ATPase module from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-49774: Nucleosome from fully-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-49775: Cryo-EM structure of human SRCAP-nucleosome complex in the partially-engaged state (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-49776: RuvBL core from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-49777: ARP6-ZNHIT1 module from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-49778: Nucleosome from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.9 Å

EMDB-49779: ATPase module from partially-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.8 Å

EMDB-49780: Cryo-EM structure of human SRCAP-nucleosome complex in the pre-engaged state (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-49781: RuvBL core from pre-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.7 Å

EMDB-49782: ARP6-ZNHIT1 module from pre-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 4.0 Å

EMDB-49783: Nucleosome from pre-engaged state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 5.3 Å

EMDB-49784: Cryo-EM structure of human SRCAP complex in the unbound state (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-49785: RuvBL core from unbound SRCAP complex (focused refinement)
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-49786: ARP6-ZNHIT1 module from unbound SRCAP complex (focused refinement)
Method: EM (single particle) / Resolution: 3.7 Å

EMDB-49787: Cryo-EM structure of human SRCAP-nucleosome complex in the encounter state (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 3.9 Å

EMDB-49788: RuvBL core from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-49789: ARP6-ZNHIT1 module from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 3.7 Å

EMDB-49790: ATPase module from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 4.2 Å

EMDB-49791: Nucleosome from encounter state of SRCAP-nucleosome complex (focused refinement)
Method: EM (single particle) / Resolution: 5.1 Å

EMDB-49850: Cryo-EM structure of the TRRAP lobe of the native human TIP60 complex (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-49851: TRRAP lobe of the native human TIP60 complex, core region (focused refinement)
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-49852: TRRAP lobe of the native human TIP60 complex, top region (focused refinement)
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-49853: TRRAP lobe of the native human TIP60 complex, bottom region (focused refinement)
Method: EM (single particle) / Resolution: 3.2 Å

EMDB-49854: TRRAP lobe of the native human TIP60 complex, distal region (focused refinement)
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-49855: Cryo-EM structure of the reconstituted TRRAP lobe of the human TIP60 complex (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 2.4 Å

EMDB-49857: Reconstituted TRRAP lobe of the human TIP60 complex, top region (focused refinement)
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-49858: Reconstituted TRRAP lobe of the human TIP60 complex, distal region (focused refinement)
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-49859: Reconstituted TRRAP lobe of the human TIP60 complex, bottom region (focused refinement)
Method: EM (single particle) / Resolution: 2.9 Å

EMDB-49860: Cryo-EM structure of the reconstituted RuvBL lobe of the human TIP60 complex (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-49861: Reconstituted RuvBL lobe of the human TIP60 complex, bottom RUVBL region (focused refinement)
Method: EM (single particle) / Resolution: 2.7 Å

EMDB-49862: Reconstituted RuvBL lobe of the human TIP60 complex, top RUVBL region (focused refinement)
Method: EM (single particle) / Resolution: 3.5 Å

EMDB-49863: Reconstituted RuvBL lobe of the human TIP60 complex, HSA module (focused refinement)
Method: EM (single particle) / Resolution: 3.0 Å

EMDB-49864: Reconstituted TRRAP lobe of the human TIP60 complex, core region (focused refinement)
Method: EM (single particle) / Resolution: 2.3 Å

EMDB-49877: RuvBL lobe of the native human TIP60 complex, ATPase module (focused refinement)
Method: EM (single particle) / Resolution: 7.2 Å

EMDB-49878: Cryo-EM structure of the RuvBL lobe of the native human TIP60 complex (consensus map filtered by local resolution)
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-49879: RuvBL lobe of the native human TIP60 complex, bottom RUVBL region (focused refinement)
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-49880: RuvBL lobe of the native human TIP60 complex, top RUVBL region (focused refinement)
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-49881: RuvBL lobe of the native human TIP60 complex, HSA module (focused refinement)
Method: EM (single particle) / Resolution: 3.4 Å

Chemicals

ChemComp-AGS:
PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER / ATP-gamma-S, energy-carrying molecule analogue*YM

ChemComp-MG:
Unknown entry

ChemComp-ZN:
Unknown entry

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-IHP:
INOSITOL HEXAKISPHOSPHATE

Source
  • homo sapiens (human)
  • xenopus laevis (African clawed frog)
  • synthetic construct (others)
  • rhodococcus rhodochrous (bacteria)
  • escherichia coli k-12 (bacteria)
KeywordsGENE REGULATION / Chromatin Remodeler / Snf2 family ATPase / H2A.Z / histone acetyltransferase / chromatin regulator / transcription regulation

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