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TitleMolecular basis of promiscuous chemokine binding and structural mimicry at the C-X-C chemokine receptor, CXCR2.
Journal, issue, pagesMol Cell, Vol. 85, Issue 5, Page 976-988.e9, Year 2025
Publish dateMar 6, 2025
AuthorsShirsha Saha / Fumiya K Sano / Saloni Sharma / Manisankar Ganguly / Sudha Mishra / Annu Dalal / Hiroaki Akasaka / Takaaki A Kobayashi / Nashrah Zaidi / Divyanshu Tiwari / Nabarun Roy / Manish K Yadav / Nilanjana Banerjee / Sayantan Saha / Samanwita Mohapatra / Yuzuru Itoh / Andy Chevigné / Ramanuj Banerjee / Wataru Shihoya / Osamu Nureki / Arun K Shukla /
PubMed AbstractSelectivity of natural agonists for their cognate receptors is a hallmark of G-protein-coupled receptors (GPCRs); however, this selectivity often breaks down at the chemokine receptors. Chemokines ...Selectivity of natural agonists for their cognate receptors is a hallmark of G-protein-coupled receptors (GPCRs); however, this selectivity often breaks down at the chemokine receptors. Chemokines often display promiscuous binding to chemokine receptors, but the underlying molecular determinants remain mostly elusive. Here, we perform a comprehensive transducer-coupling analysis, testing all known C-X-C chemokines on every C-X-C type chemokine receptor to generate a global fingerprint of the selectivity and promiscuity encoded within this system. Taking lead from this, we determine cryoelectron microscopy (cryo-EM) structures of the most promiscuous receptor, C-X-C chemokine receptor 2 (CXCR2), in complex with several chemokines. These structural snapshots elucidate the details of ligand-receptor interactions, including structural motifs, which are validated using mutagenesis and functional experiments. We also observe that most chemokines position themselves on CXCR2 as a dimer while CXCL6 exhibits a monomeric binding pose. Taken together, our findings provide the molecular basis of chemokine promiscuity at CXCR2 with potential implications for developing therapeutic molecules.
External linksMol Cell / PubMed:39978339
MethodsEM (single particle)
Resolution2.8 - 3.71 Å
Structure data

EMDB-38719, PDB-8xvu:
Structure of CXCR2 bound to CXCL2 (Ligand-receptor focused map)
Method: EM (single particle) / Resolution: 3.09 Å

EMDB-38732, PDB-8xwa:
Structure of CXCR2 bound to CXCL1 (Ligand-receptor focused map)
Method: EM (single particle) / Resolution: 3.48 Å

EMDB-38734, PDB-8xwf:
Structure of CXCR2 bound to CXCL3 (Ligand-receptor focused map)
Method: EM (single particle) / Resolution: 3.65 Å

EMDB-38738, PDB-8xwm:
Structure of CXCR2 bound to CXCL6 (Ligand-receptor focused map)
Method: EM (single particle) / Resolution: 3.71 Å

EMDB-38739, PDB-8xwn:
Structure of CXCR2 bound to CXCL8 (Ligand-receptor focused map)
Method: EM (single particle) / Resolution: 3.29 Å

EMDB-38742, PDB-8xws:
Structure of CXCR2 bound to CXCL5 (Ligand-receptor focused map)
Method: EM (single particle) / Resolution: 3.06 Å

EMDB-38743, PDB-8xwv:
Structure of CXCR2 bound to CXCL1 (CXCR2-CXCL1-Go Full map)
Method: EM (single particle) / Resolution: 3.07 Å

EMDB-38744, PDB-8xx3:
Structure of CXCR2 bound to CXCL3 (CXCR2-CXCL3-Go Full map)
Method: EM (single particle) / Resolution: 3.38 Å

EMDB-38747, PDB-8xx6:
Structure of CXCR2 bound to CXCL8 (CXCR2-CXCL8-Go Full map)
Method: EM (single particle) / Resolution: 2.99 Å

EMDB-38748, PDB-8xx7:
Structure of CXCR2 bound to CXCL5 (CXCR2-CXCL5-Go Full map)
Method: EM (single particle) / Resolution: 3.32 Å

EMDB-38749, PDB-8xxh:
Structure of CXCR2 bound to CXCL2 (CXCR2-CXCL2-Go Full map)
Method: EM (single particle) / Resolution: 2.8 Å

EMDB-38759, PDB-8xxr:
Structure of CXCR2 bound to CXCL6 (CXCR2-CXCL6-Go Full map)
Method: EM (single particle) / Resolution: 3.17 Å

EMDB-38764, PDB-8xxx:
Structure of CXCR2 bound to CXCL6 (Composite map)
Method: EM (single particle) / Resolution: 3.17 Å

Source
  • homo sapiens (human)
  • mus musculus (house mouse)
KeywordsSIGNALING PROTEIN/IMMUNE SYSTEM / GPCR / Arrestin / SIGNALING PROTEIN-IMMUNE SYSTEM complex

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