EMDB/PDB/SASBDBから引用されている文献のデータベース

キーワード
構造解析手法	All X線回折 NMR 電子顕微鏡小角散乱中性子線回折線維回折粉末回折赤外分光 EPR FRET 理論モデルハイブリッド
著者・登録者
ジャーナル
IF	>30 >20 >10 >5 all

タイトル	Structural basis for transthiolation intermediates in the ubiquitin pathway
ジャーナル・号・ページ	To be published
掲載日	2024年3月22日 (構造データの登録日)
著者	Kochanczyk T / Hann ZS / Lux MC / Reyes AMVD / Ji C / Tan DS / Lima CD
リンク	PubMedで検索
手法	EM (単粒子)
解像度	2.5 - 4.16 Å
構造データ	44200 9b55 EMDB-44200, PDB-9b55: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 1 手法: EM (単粒子) / 解像度: 3.23 Å 44201 9b56 EMDB-44201, PDB-9b56: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 2 手法: EM (単粒子) / 解像度: 3.35 Å 44202 9b57 EMDB-44202, PDB-9b57: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 3 手法: EM (単粒子) / 解像度: 3.37 Å 44203 9b58 EMDB-44203, PDB-9b58: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 4 手法: EM (単粒子) / 解像度: 3.39 Å 44204 9b59 EMDB-44204, PDB-9b59: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 5 手法: EM (単粒子) / 解像度: 3.49 Å 44205 9b5a EMDB-44205, PDB-9b5a: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 6 手法: EM (単粒子) / 解像度: 3.65 Å 44206 9b5b EMDB-44206, PDB-9b5b: Ubiquitin E2-Ub-E3 HECT tetrahedral transthiolation intermediate mimic - state 7 手法: EM (単粒子) / 解像度: 3.31 Å 44207 9b5c EMDB-44207, PDB-9b5c: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - consensus map and model 手法: EM (単粒子) / 解像度: 2.5 Å 44208 9b5d EMDB-44208, PDB-9b5d: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from consensus 手法: EM (単粒子) / 解像度: 2.8 Å 44209 9b5e EMDB-44209, PDB-9b5e: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from consensus 手法: EM (単粒子) / 解像度: 2.81 Å 44210 9b5f EMDB-44210, PDB-9b5f: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 1 map and model (Ub(A)/ATP/Mg) 手法: EM (単粒子) / 解像度: 2.78 Å 44211 9b5g EMDB-44211, PDB-9b5g: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 2 map and model (Ub(A)/ATP/Mg) 手法: EM (単粒子) / 解像度: 2.67 Å 44212 9b5h EMDB-44212, PDB-9b5h: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 3 map and model (Ub(A)-AMP/PPi/Mg) 手法: EM (単粒子) / 解像度: 2.69 Å 44213 9b5i EMDB-44213, PDB-9b5i: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 4 map and model (Ub(A)-AMP/PPi/Mg) 手法: EM (単粒子) / 解像度: 2.7 Å 44214 9b5j EMDB-44214, PDB-9b5j: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - cluster 5 map and model (Ub(A)-AMP) 手法: EM (単粒子) / 解像度: 2.86 Å 44215 9b5k EMDB-44215, PDB-9b5k: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (Ub(A)/ATP/Mg) 手法: EM (単粒子) / 解像度: 3.16 Å 44216 9b5l EMDB-44216, PDB-9b5l: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (doubly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (Ub(A)-AMP) 手法: EM (単粒子) / 解像度: 3.3 Å 44217 9b5m EMDB-44217, PDB-9b5m: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - consensus map and model 手法: EM (単粒子) / 解像度: 2.79 Å 44218 9b5n EMDB-44218, PDB-9b5n: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from consensus 手法: EM (単粒子) / 解像度: 3.12 Å 44219 9b5o EMDB-44219, PDB-9b5o: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from consensus 手法: EM (単粒子) / 解像度: 3.19 Å 44220 9b5p EMDB-44220, PDB-9b5p: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 1 map and model (ATP/Mg) 手法: EM (単粒子) / 解像度: 3.08 Å 44221 9b5q EMDB-44221, PDB-9b5q: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 2 map and model (ATP/Mg) 手法: EM (単粒子) / 解像度: 2.95 Å 44222 9b5r EMDB-44222, PDB-9b5r: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 3 map and model (ATP/Mg) 手法: EM (単粒子) / 解像度: 2.95 Å 44223 9b5s EMDB-44223, PDB-9b5s: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 4 map and model (ATP/Mg) 手法: EM (単粒子) / 解像度: 2.96 Å 44224 9b5t EMDB-44224, PDB-9b5t: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - cluster 5 map and model (ATP/Mg) 手法: EM (単粒子) / 解像度: 3.16 Å 44225 9b5u EMDB-44225, PDB-9b5u: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 1 (ATP/Mg) 手法: EM (単粒子) / 解像度: 3.67 Å 44226 9b5v EMDB-44226, PDB-9b5v: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 1 (ATP/Mg) 手法: EM (単粒子) / 解像度: 3.94 Å 44227 9b5w EMDB-44227, PDB-9b5w: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 1 map and model from cluster 5 (ATP/Mg) 手法: EM (単粒子) / 解像度: 3.96 Å 44228 9b5x EMDB-44228, PDB-9b5x: Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 5 (ATP/Mg) 手法: EM (単粒子) / 解像度: 4.16 Å
化合物	PDB-1aiv: APO OVOTRANSFERRIN ChemComp-MG: Unknown entry / マグネシウムジカチオン ChemComp-ATP: ADENOSINE-5'-TRIPHOSPHATE / ATP / ATP, エネルギー貯蔵分子YM ChemComp-POP: PYROPHOSPHATE 2- ChemComp-AMP: ADENOSINE MONOPHOSPHATE / AMP / AMPYM
由来	schizosaccharomyces pombe 972h- (分裂酵母)
キーワード	LIGASE / UBIQUITIN / E2 / E3 / HECT / NEDD4 / RSP5 / PUB2 / UBC4 / TRANSTHIOESTERIFICATION / THIOESTER / TRANSTHIOLATION / TETRAHEDRAL INTERMEDIATE / ADENYLATION / INHIBITOR / NUCLEUS / PHOSPHOPROTEIN / UBL CONJUGATION PATHWAY / UBL / ATP ATP-BINDING / AMP / NUCLEOTIDE-BINDING / ISOPEPTIDE BOND / E1 / UBA1 / ATP / ATP-binding