タイトル | Crystal structure and functional implications of cyclic di-pyrimidine-synthesizing cGAS/DncV-like nucleotidyltransferases. |
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ジャーナル・号・ページ | Nat Commun, Vol. 14, Page 5078-5078, Year 2023 |
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掲載日 | 2022年3月2日 (構造データの登録日) |
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著者 | Yang, C.S. / Ko, T.P. / Chen, C.J. / Hou, M.H. / Wang, Y.C. / Chen, Y. |
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リンク | Nat Commun / PubMed:37604815 |
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手法 | X線回折 |
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解像度 | 1.6 - 2.6 Å |
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構造データ | PDB-7x4a: Native CD-NTase ClCdnE 手法: X-RAY DIFFRACTION / 解像度: 2.21 Å PDB-7x4c: Native CD-NTase EfCdnE 手法: X-RAY DIFFRACTION / 解像度: 1.75 Å PDB-7x4f: Native CD-NTase LpCdnE 手法: X-RAY DIFFRACTION / 解像度: 2.46 Å PDB-7x4g: CD-NTase ClCdnE in complex with substrate UTP 手法: X-RAY DIFFRACTION / 解像度: 2.6 Å PDB-7x4p: CD-NTase EfCdnE in complex with intermediate pppUpU 手法: X-RAY DIFFRACTION / 解像度: 1.6 Å PDB-7x4q: LpCdnE UTP Mg complex 手法: X-RAY DIFFRACTION / 解像度: 1.95 Å PDB-7x4t: LpCdnE UMPNPP Mg complex 手法: X-RAY DIFFRACTION / 解像度: 2.2 Å PDB-8hyk: CD-NTase EfCdnE in complex with intermediate pppU[2'-5']p 手法: X-RAY DIFFRACTION / 解像度: 2.021 Å |
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化合物 | ChemComp-2KH: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
ChemComp-NE0: [[(2R,3R,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate
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由来 | cecembia lonarensis (バクテリア)![](img/tx_bacteria.gif) ![](data/taxo/wicon/Enterococcus_faecalis20023-300.jpg) enterococcus faecalis (乳酸球菌)![](img/tx_bacteria.gif) ![](data/taxo/wicon/Legionella_pneumophila_01.jpg) legionella pneumophila (レジオネラ・ニューモフィラ) enterococcus faecalis engen0062 (乳酸球菌)
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キーワード | TRANSFERASE (転移酵素) / CD-NTase / cGAS / cyclic dinucleotide / intermediate complex / substrate complex / complex / substrate analogue |
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