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Structure paper

タイトルRegulation of inositol 5-phosphatase activity by the C2 domain of SHIP1 and SHIP2.
ジャーナル・号・ページStructure, Year 2024
掲載日2020年10月30日 (構造データの登録日)
著者Bradshaw, W.J. / Kennedy, E.C. / Moreira, T. / Smith, L.A. / Chalk, R. / Katis, V.L. / Benesch, J.L.P. / Brennan, P.E. / Murphy, E.J. / Gileadi, O.
リンクStructure / PubMed:38309262
手法X線回折
解像度1.086 - 1.98 Å
構造データ

PDB-5rw2:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2737076969
手法: X-RAY DIFFRACTION / 解像度: 1.22 Å

PDB-5rw3:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2064898339
手法: X-RAY DIFFRACTION / 解像度: 1.37 Å

PDB-5rw4:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z19735192
手法: X-RAY DIFFRACTION / 解像度: 1.31 Å

PDB-5rw5:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z69092635
手法: X-RAY DIFFRACTION / 解像度: 1.38 Å

PDB-5rw6:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434816
手法: X-RAY DIFFRACTION / 解像度: 1.32 Å

PDB-5rw7:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z86622311
手法: X-RAY DIFFRACTION / 解像度: 1.23 Å

PDB-5rw8:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z28290384
手法: X-RAY DIFFRACTION / 解像度: 1.27 Å

PDB-5rw9:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z203581214
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-5rwa:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434812
手法: X-RAY DIFFRACTION / 解像度: 1.29 Å

PDB-5rwb:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434899
手法: X-RAY DIFFRACTION / 解像度: 1.25 Å

PDB-5rwc:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434879
手法: X-RAY DIFFRACTION / 解像度: 1.4 Å

PDB-5rwd:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1675346324
手法: X-RAY DIFFRACTION / 解像度: 1.29 Å

PDB-5rwe:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434865
手法: X-RAY DIFFRACTION / 解像度: 1.34 Å

PDB-5rwf:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1983897532
手法: X-RAY DIFFRACTION / 解像度: 1.35 Å

PDB-5rwg:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z17497990
手法: X-RAY DIFFRACTION / 解像度: 1.46 Å

PDB-5rwh:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1152242726
手法: X-RAY DIFFRACTION / 解像度: 1.56 Å

PDB-5rwi:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434926
手法: X-RAY DIFFRACTION / 解像度: 1.29 Å

PDB-5rwj:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434824
手法: X-RAY DIFFRACTION / 解像度: 1.26 Å

PDB-5rwk:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1267881672
手法: X-RAY DIFFRACTION / 解像度: 1.32 Å

PDB-5rwl:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1348371854
手法: X-RAY DIFFRACTION / 解像度: 1.37 Å

PDB-5rwm:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z136583524
手法: X-RAY DIFFRACTION / 解像度: 1.36 Å

PDB-5rwn:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1310876699
手法: X-RAY DIFFRACTION / 解像度: 1.38 Å

PDB-5rwo:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434898
手法: X-RAY DIFFRACTION / 解像度: 1.29 Å

PDB-5rwp:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z915492990
手法: X-RAY DIFFRACTION / 解像度: 1.48 Å

PDB-5rwq:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z44592329
手法: X-RAY DIFFRACTION / 解像度: 1.32 Å

PDB-5rwr:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434783
手法: X-RAY DIFFRACTION / 解像度: 1.43 Å

PDB-5rws:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1478435544
手法: X-RAY DIFFRACTION / 解像度: 1.28 Å

PDB-5rwt:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z32327641
手法: X-RAY DIFFRACTION / 解像度: 1.43 Å

PDB-5rwu:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z57778470
手法: X-RAY DIFFRACTION / 解像度: 1.37 Å

PDB-5rwv:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1103351268
手法: X-RAY DIFFRACTION / 解像度: 1.25 Å

PDB-5rww:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2241115980
手法: X-RAY DIFFRACTION / 解像度: 1.16 Å

PDB-5rwx:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z44567722
手法: X-RAY DIFFRACTION / 解像度: 1.34 Å

PDB-5rwy:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1259335913
手法: X-RAY DIFFRACTION / 解像度: 1.35 Å

PDB-5rwz:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z57299529
手法: X-RAY DIFFRACTION / 解像度: 1.42 Å

PDB-5rx0:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z57258487
手法: X-RAY DIFFRACTION / 解像度: 1.43 Å

PDB-5rx1:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2466069494
手法: X-RAY DIFFRACTION / 解像度: 1.31 Å

PDB-5rx2:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1827898537
手法: X-RAY DIFFRACTION / 解像度: 1.27 Å

PDB-5rx3:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1262327505
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-5rx4:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1593306637
手法: X-RAY DIFFRACTION / 解像度: 1.35 Å

PDB-5rx5:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2443429438
手法: X-RAY DIFFRACTION / 解像度: 1.28 Å

PDB-5rx6:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z30620520
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-5rx7:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1545196403
手法: X-RAY DIFFRACTION / 解像度: 1.36 Å

PDB-5rx8:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434884
手法: X-RAY DIFFRACTION / 解像度: 1.34 Å

PDB-5rx9:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z54226095
手法: X-RAY DIFFRACTION / 解像度: 1.29 Å

PDB-5rxa:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434829
手法: X-RAY DIFFRACTION / 解像度: 1.24 Å

PDB-5rxb:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434821
手法: X-RAY DIFFRACTION / 解像度: 1.58 Å

PDB-5rxc:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434868
手法: X-RAY DIFFRACTION / 解像度: 1.59 Å

PDB-5rxd:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z111810692
手法: X-RAY DIFFRACTION / 解像度: 1.33 Å

PDB-5rxe:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z240654968
手法: X-RAY DIFFRACTION / 解像度: 1.25 Å

PDB-5rxf:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2074076908
手法: X-RAY DIFFRACTION / 解像度: 1.26 Å

PDB-5rxg:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434909
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-5rxh:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z939944666
手法: X-RAY DIFFRACTION / 解像度: 1.42 Å

PDB-5rxi:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2447286438
手法: X-RAY DIFFRACTION / 解像度: 1.74 Å

PDB-5rxj:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1722836661
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-5rxk:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434840
手法: X-RAY DIFFRACTION / 解像度: 1.46 Å

PDB-5rxl:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1673618163
手法: X-RAY DIFFRACTION / 解像度: 1.49 Å

PDB-5rxm:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434894
手法: X-RAY DIFFRACTION / 解像度: 1.46 Å

PDB-5rxo:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z68299550
手法: X-RAY DIFFRACTION / 解像度: 1.71 Å

PDB-5rxp:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434944
手法: X-RAY DIFFRACTION / 解像度: 1.53 Å

PDB-5rxq:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z26548083
手法: X-RAY DIFFRACTION / 解像度: 1.65 Å

PDB-5rxr:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1148747945
手法: X-RAY DIFFRACTION / 解像度: 1.4 Å

PDB-5rxs:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1818332938
手法: X-RAY DIFFRACTION / 解像度: 1.37 Å

PDB-5rxt:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z319545618
手法: X-RAY DIFFRACTION / 解像度: 1.63 Å

PDB-5rxu:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434858
手法: X-RAY DIFFRACTION / 解像度: 1.64 Å

PDB-5rxv:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z45527714
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-5rxw:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2856434856
手法: X-RAY DIFFRACTION / 解像度: 1.34 Å

PDB-5rxx:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1275599911
手法: X-RAY DIFFRACTION / 解像度: 1.43 Å

PDB-5rxy:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z32014663
手法: X-RAY DIFFRACTION / 解像度: 1.4 Å

PDB-5rxz:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z19739650
手法: X-RAY DIFFRACTION / 解像度: 1.56 Å

PDB-5ry0:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z275165822
手法: X-RAY DIFFRACTION / 解像度: 1.98 Å

PDB-5ry1:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2940170964
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-5ry2:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z19727416
手法: X-RAY DIFFRACTION / 解像度: 1.54 Å

PDB-5ry3:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2027158783
手法: X-RAY DIFFRACTION / 解像度: 1.5 Å

PDB-5ry4:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z300245038
手法: X-RAY DIFFRACTION / 解像度: 1.47 Å

PDB-5ry5:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z166605480
手法: X-RAY DIFFRACTION / 解像度: 1.54 Å

PDB-5ry6:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z198194394
手法: X-RAY DIFFRACTION / 解像度: 1.74 Å

PDB-5ry7:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1267773591
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-5ry8:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1374778753
手法: X-RAY DIFFRACTION / 解像度: 1.43 Å

PDB-5ry9:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z274575916
手法: X-RAY DIFFRACTION / 解像度: 1.52 Å

PDB-5rya:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1741973467
手法: X-RAY DIFFRACTION / 解像度: 1.32 Å

PDB-5ryb:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z927400026
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-5ryc:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z18197050
手法: X-RAY DIFFRACTION / 解像度: 1.56 Å

PDB-5ryd:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z955369596
手法: X-RAY DIFFRACTION / 解像度: 1.6 Å

PDB-5rye:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z33545544
手法: X-RAY DIFFRACTION / 解像度: 1.7 Å

PDB-5ryf:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1266823232
手法: X-RAY DIFFRACTION / 解像度: 1.49 Å

PDB-5ryg:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z168883358
手法: X-RAY DIFFRACTION / 解像度: 1.47 Å

PDB-5ryh:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1212984951
手法: X-RAY DIFFRACTION / 解像度: 1.72 Å

PDB-5ryi:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z274555794
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-5ryj:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z2177153697
手法: X-RAY DIFFRACTION / 解像度: 1.42 Å

PDB-5ryk:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1346370629
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-5ryl:
INPP5D PanDDA analysis group deposition -- Crystal Structure of the phosphatase and C2 domains of SHIP1 in complex with Z1745658474
手法: X-RAY DIFFRACTION / 解像度: 1.55 Å

PDB-6ibd:
The Phosphatase and C2 domains of Human SHIP1
手法: X-RAY DIFFRACTION / 解像度: 1.48 Å

PDB-6xy7:
Human SHIP1 with magnesium and phosphate bound to the active site
手法: X-RAY DIFFRACTION / 解像度: 1.086 Å

PDB-8pdg:
The phosphatase and C2 domains of SHIP1 with covalent Z2738285202
手法: X-RAY DIFFRACTION / 解像度: 1.4 Å

PDB-8pdh:
The phosphatase and C2 domains of SHIP1 with covalent Z1742148362
手法: X-RAY DIFFRACTION / 解像度: 1.45 Å

PDB-8pdi:
The phosphatase and C2 domains of SHIP1 with covalent Z1763271112
手法: X-RAY DIFFRACTION / 解像度: 1.3 Å

PDB-8pdj:
The phosphatase and C2 domains of SHIP1 with covalent Z56948267
手法: X-RAY DIFFRACTION / 解像度: 1.4 Å

化合物

ChemComp-T0V:
1-(3-fluorophenyl)-N-[(furan-2-yl)methyl]methanamine

ChemComp-DMS:
DIMETHYL SULFOXIDE / 2-チアプロパン2-オキシド / DMSO, 沈殿剤*YM

ChemComp-HOH:
WATER

ChemComp-WLY:
2-(4-methylphenyl)-N-{[(2S)-oxolan-2-yl]methyl}acetamide

ChemComp-WLV:
N-(3-fluorophenyl)-2-phenoxyacetamide

ChemComp-WMV:
N-(2-cyclohexylethyl)-3,5-dimethyl-1,2-oxazole-4-carboxamide

ChemComp-WLS:
1-(pyridin-4-yl)-N-[(thiophen-2-yl)methyl]methanamine

ChemComp-WMY:
3-chloro-N-(1,2-oxazol-3-yl)benzamide

ChemComp-WN1:
N-(2-fluorophenyl)-3-methoxybenzamide

ChemComp-QKZ:
2-(4-chlorophenyl)-~{N}-pyrimidin-2-yl-ethanamide

ChemComp-PO4:
PHOSPHATE ION / ホスファ-ト

ChemComp-O3M:
4-[(3,4-dihydroisoquinolin-2(1H)-yl)methyl]phenol

ChemComp-T0Y:
1-[(thiophen-3-yl)methyl]piperidin-4-ol

ChemComp-2L1:
2-[(4-methyl-1H-imidazol-5-yl)methyl]-1,2,3,4-tetrahydroisoquinoline

ChemComp-NUJ:
trans-3-[(2,6-dimethylpyrimidin-4-yl)(methyl)amino]cyclobutan-1-ol

ChemComp-JJG:
4-[2-(phenylsulfanyl)ethyl]morpholine / フェニル(2-モルホリノエチル)スルフィド

ChemComp-WMS:
5-fluoro-N-[(2-methyl-1,3-thiazol-5-yl)methyl]pyridin-3-amine

ChemComp-S07:
2-(2,4-dimethylphenoxy)-1-morpholin-4-yl-ethanone

ChemComp-VZM:
N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea

ChemComp-O3D:
4-[(furan-2-yl)methyl]-1lambda~6~,4-thiazinane-1,1-dione

ChemComp-AXS:
1-(4-fluorophenyl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine

ChemComp-WN4:
N-(6-methylpyridin-2-yl)-L-prolinamide / N-(6-メチル-2-ピリジニル)-L-プロリンアミド

ChemComp-NTG:
5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile

ChemComp-NU4:
2-methyl-N-(pyridin-4-yl)furan-3-carboxamide

ChemComp-U0V:
2-fluoro-N-[2-(pyridin-4-yl)ethyl]benzamide

ChemComp-AXG:
1-(phenylmethyl)-4-pyrrol-1-yl-piperidine / 1-(1-ベンジル-4-ピペリジニル)-1H-ピロ-ル

ChemComp-JO1:
1-methyl-N-[(thiophen-2-yl)methyl]-1H-pyrazole-5-carboxamide

ChemComp-K0G:
N-phenyl-N'-pyridin-3-ylurea / 1-(3-ピリジル)-3-フェニル尿素

ChemComp-O3G:
N-benzyl-1-(4-fluorophenyl)methanamine / ベンジル(4-フルオロベンジル)アミン

ChemComp-WN7:
5-methyl-N-[(pyridin-4-yl)methyl]pyridin-3-amine

ChemComp-JMM:
[4-(cyclopropanecarbonyl)piperazin-1-yl](furan-2-yl)methanone

ChemComp-WNA:
1-methyl-N-[(2-methylphenyl)methyl]-1H-tetrazol-5-amine

ChemComp-WND:
2-methyl-1-[(oxan-4-yl)amino]propan-2-ol

ChemComp-NV7:
1-[(furan-2-yl)methyl]-4-(methylsulfonyl)piperazine

ChemComp-K0V:
methyl 1-(tert-butylcarbamoyl)piperidine-4-carboxylate

ChemComp-RWV:
1-{1-[(2-methyl-1,3-thiazol-4-yl)methyl]piperidin-4-yl}methanamine

ChemComp-WNG:
N-[(Z)-2-phenylethenyl]-1H-benzimidazol-2-amine

ChemComp-NVD:
N-{[4-(dimethylamino)phenyl]methyl}-4H-1,2,4-triazol-4-amine

ChemComp-MG:
Unknown entry / マグネシウムジカチオン

ChemComp-WMG:
1-[(1S)-1-(2-fluorophenyl)ethyl]piperazine

ChemComp-WMD:
1-[(1R)-1-(2-fluorophenyl)ethyl]piperazine

ChemComp-WP4:
(3R)-N-benzylpyrrolidin-3-amine

ChemComp-WM7:
(3S)-N-benzylpyrrolidin-3-amine

ChemComp-WNJ:
N-{[(3R)-pyrrolidin-3-yl]methyl}pyridin-2-amine

ChemComp-H0D:
N-(4-chlorophenyl)-N'-[(2R)-1-hydroxybutan-2-yl]urea

ChemComp-WNM:
(3S)-1-(phenylsulfonyl)pyrrolidin-3-amine

ChemComp-GX4:
cyclopropyl-[4-(4-fluorophenyl)piperazin-1-yl]methanone

ChemComp-UWV:
2-fluoro-N-[(1H-pyrazol-3-yl)methyl]aniline

ChemComp-O3J:
1-[4-(3-phenylpropyl)piperazin-1-yl]ethan-1-one / 1-[4-(3-フェニルプロピル)ピペラジン-1-イル]エタノン

ChemComp-WLJ:
(azepan-1-yl)(2,6-difluorophenyl)methanone

ChemComp-ELQ:
[3,4-bis(fluoranyl)phenyl]-(4-methylpiperazin-1-yl)methanone

ChemComp-RX7:
2-methyl-2-{[(3-methylthiophen-2-yl)methyl]amino}propan-1-ol

ChemComp-NVY:
1-ethyl-N-(2-fluorophenyl)piperidin-4-amine

ChemComp-WNP:
N-(3-chlorophenyl)-2,2,2-trifluoroacetamide / N-(3-クロロフェニル)トリフルオロアセトアミド

ChemComp-WNS:
N-(2-chloropyridin-3-yl)butanamide

ChemComp-WLG:
1-(5-azaspiro[2.5]octan-5-yl)-2-(difluoromethoxy)ethan-1-one

ChemComp-WLD:
(2S)-1-{[(2,6-dichlorophenyl)methyl]amino}propan-2-ol

ChemComp-WK7:
3-fluoro-4-(piperazin-1-yl)benzonitrile

ChemComp-O3A:
(3S)-N-methyl-N-phenylpyrrolidine-3-carboxamide

ChemComp-WK4:
2-(1H-imidazol-1-yl)ethyl dimethylcarbamate

ChemComp-RXJ:
4-(4-methylpiperazin-1-yl)benzonitrile / 4-(4-メチルピペラジノ)ベンゾニトリル

ChemComp-WL7:
4-amino-N-(2-hydroxyethyl)-N-methylbenzene-1-sulfonamide

ChemComp-GWV:
~{N},~{N}-dimethyl-4-[(propan-2-ylamino)methyl]aniline

ChemComp-JOV:
3-chloro-N-(1-hydroxy-2-methylpropan-2-yl)benzamide

ChemComp-AWD:
~{N}-(4-fluorophenyl)-4-methyl-piperazine-1-carboxamide / N-(4-フルオロフェニル)-4-メチル-1-ピペラジンカルボアミド

ChemComp-WL4:
N-(3-cyanophenyl)-2-methylpropanamide

ChemComp-WKY:
N-(3-methylpyridin-4-yl)acetamide

ChemComp-S8G:
1-[(3~{R})-3-azanylpiperidin-1-yl]-4,4,4-tris(fluoranyl)butan-1-one

ChemComp-RXS:
3-[(2-methyl-1H-imidazol-1-yl)methyl]benzonitrile

ChemComp-WKJ:
(3R)-1-[(4-chlorophenyl)methyl]pyrrolidin-3-ol

ChemComp-WLP:
2-chlorobenzene-1-thiol / 2-クロロベンゼンチオ-ル

ChemComp-T1S:
4-[(3-chlorophenyl)methyl]morpholine

ChemComp-WKG:
1-(2-azaspiro[5.6]dodecan-2-yl)ethan-1-one

ChemComp-WNV:
N,N,2,3-tetramethylbenzamide

ChemComp-WKD:
(2R)-2-(4-cyanophenoxy)propanamide

ChemComp-WNY:
1-[4-(4-chlorophenyl)piperazin-1-yl]ethan-1-one

ChemComp-WO1:
(3R)-1-methylpiperidin-3-yl furan-2-carboxylate

ChemComp-W0M:
(2R)-2-(4-chlorophenoxy)propanamide / [R,(-)]-2-(p-クロロフェノキシ)プロピオンアミド

ChemComp-WKA:
N-(2,1,3-benzoxadiazol-4-yl)acetamide / N-(ベンゾフラザン-4-イル)アセトアミド

ChemComp-O0P:
N-[(3-fluorophenyl)methyl]-N-methylsulfuric diamide

ChemComp-VWA:
(1S)-1-(4-fluorophenyl)-N-methylethan-1-amine

ChemComp-O1M:
4-(4-fluorophenyl)piperazine-1-carboxamide

ChemComp-WLA:
1-[(oxan-4-yl)methyl]piperazine

ChemComp-B1J:
[1-(4-chlorophenyl)-1,2,3-triazol-4-yl]methanol

ChemComp-BTB:
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / ビストリス / pH緩衝剤*YM

ChemComp-MN:
Unknown entry

ChemComp-WKS:
2,4-dimethyl-6-(piperazin-1-yl)pyrimidine

ChemComp-WKP:
(4-methoxyphenyl)(piperidin-4-yl)methanone

ChemComp-WKM:
(2S)-2-amino-3-methyl-1-(morpholin-4-yl)butan-1-one

ChemComp-WL1:
methyl 4-sulfanylbenzoate / p-メルカプト安息香酸メチル

ChemComp-WKV:
N-[(5-bromo-2-methoxyphenyl)methyl]acetamide

ChemComp-T0J:
N~1~-phenylpiperidine-1,4-dicarboxamide

ChemComp-WHV:
(1S)-1-(2,4-dimethyl-1,3-thiazol-5-yl)-N-methylethan-1-amine

ChemComp-WO7:
1-(1,4-diazepan-1-yl)ethan-1-one / 1-アセチルヘキサヒドロ-1H-1,4-ジアゼピン

ChemComp-WOA:
(3S)-3-(methylamino)-1-phenylpiperidin-2-one

ChemComp-NZ4:
N-(3-acetylphenyl)morpholine-4-carboxamide

ChemComp-WOD:
3-cyclopropyl-5-[(3R)-pyrrolidin-3-yl]-1,2,4-oxadiazole

ChemComp-WOJ:
(3S,4R)-3-methyl-1-(methylsulfonyl)piperidin-4-amine

ChemComp-S7J:
2-(trifluoromethyl)pyrimidine-5-carboxamide

ChemComp-PGE:
TRIETHYLENE GLYCOL / トリエチレングリコ-ル

ChemComp-YBP:
~{N}-(8-chloranylquinolin-2-yl)propanamide

ChemComp-YBU:
(5-phenyl-1,3,4-oxadiazol-2-yl)methanimine

ChemComp-EDO:
1,2-ETHANEDIOL / エチレングリコ-ル

ChemComp-YBZ:
(5-phenyl-1,3,4-thiadiazol-2-yl)methanimine

ChemComp-YC5:
4-azanyl-3-fluoranyl-benzenethiol

由来
  • homo sapiens (ヒト)
キーワードHYDROLASE / SGC - Diamond I04-1 fragment screening / PanDDA / XChemExplorer / SHIP1 / Alzheimers / Phosphatidylinositol phosphate phosphatase / Alzheimer's Disease / Phosphatidylinositol / phosphate / phosphatase / ligand / C2 / phoshphatase

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万見文献について

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お知らせ

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2022年2月9日: EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

EMDBエントリの付随情報ファイルのフォーマットが新しくなりました

  • EMDBのヘッダファイルのバージョン3が、公式のフォーマットとなりました。
  • これまでは公式だったバージョン1.9は、アーカイブから削除されます。

関連情報:EMDBヘッダ

外部リンク:wwPDBはEMDBデータモデルのバージョン3へ移行します

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2020年8月12日: 新型コロナ情報

新型コロナ情報

URL: https://pdbj.org/emnavi/covid19.php

新ページ: EM Navigatorに新型コロナウイルスの特設ページを開設しました。

関連情報:Covid-19情報 / 2020年3月5日: 新型コロナウイルスの構造データ

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2020年3月5日: 新型コロナウイルスの構造データ

新型コロナウイルスの構造データ

関連情報:万見生物種 / 2020年8月12日: 新型コロナ情報

外部リンク:COVID-19特集ページ - PDBj / 今月の分子2020年2月:コロナウイルスプロテーアーゼ

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2019年1月31日: EMDBのIDの桁数の変更

EMDBのIDの桁数の変更

  • EMDBエントリに付与されているアクセスコード(EMDB-ID)は4桁の数字(例、EMD-1234)でしたが、間もなく枯渇します。これまでの4桁のID番号は4桁のまま変更されませんが、4桁の数字を使い切った後に発行されるIDは5桁以上の数字(例、EMD-12345)になります。5桁のIDは2019年の春頃から発行される見通しです。
  • EM Navigator/万見では、接頭語「EMD-」は省略されています。

関連情報:Q: 「EMD」とは何ですか? / 万見/EM NavigatorにおけるID/アクセスコードの表記

外部リンク:EMDB Accession Codes are Changing Soon! / PDBjへお問い合わせ

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2017年7月12日: PDB大規模アップデート

PDB大規模アップデート

  • 新バージョンのPDBx/mmCIF辞書形式に基づくデータがリリースされました。
  • 今回の更新はバージョン番号が4から5になる大規模なもので、全エントリデータの書き換えが行われる「Remediation」というアップデートに該当します。
  • このバージョンアップで、電子顕微鏡の実験手法に関する多くの項目の書式が改定されました(例:em_softwareなど)。
  • EM NavigatorとYorodumiでも、この改定に基づいた表示内容になります。

外部リンク:wwPDB Remediation / OneDepデータ基準に準拠した、より強化された内容のモデル構造ファイルが、PDBアーカイブで公開されました。

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万見文献

EMDB/PDB/SASBDBから引用されている文献のデータベース

  • EMDB/PDB/SASBDBのエントリから引用されている文献のデータベースです
  • Pubmedのデータを利用しています

関連情報:EMDB / PDB / SASBDB / 万見 (Yorodumi) / EMN文献 / 新しいEM Navigatorと万見の変更点

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