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Structure paper

TitleStructural basis for two efficient modes of agropinic acid opine import into the bacterial pathogenAgrobacterium tumefaciens.
Journal, issue, pagesBiochem. J., Vol. 476, Page 165-178, Year 2019
Publish dateSep 11, 2018 (structure data deposition date)
AuthorsMarty, L. / Vigouroux, A. / Aumont-Nicaise, M. / Pelissier, F. / Meyer, T. / Lavire, C. / Dessaux, Y. / Morera, S.
External linksBiochem. J. / PubMed:30552142
MethodsX-ray diffraction
Resolution1.4 - 1.89 Å
Structure data

PDB-6hlx:
Structure of the PBP AgaA in complex with agropinic acid from A.tumefacien R10
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-6hly:
Structure in P212121 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-6hlz:
Structure in C2 form of the PBP AgtB from A.tumefacien R10 in complex with agropinic acid
Method: X-RAY DIFFRACTION / Resolution: 1.89 Å

PDB-6hm2:
Structure in P1 form of the PBP AgtB in complex with agropinic acid from A.tumefacien R10
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-G9Z:
agropinic acid

ChemComp-MES:
2-(N-MORPHOLINO)-ETHANESULFONIC ACID / pH buffer*YM

ChemComp-ACT:
ACETATE ION

ChemComp-ZN:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-P4G:
1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE

ChemComp-P6G:
HEXAETHYLENE GLYCOL / precipitant*YM

ChemComp-NA:
Unknown entry

Source
  • rhizobium radiobacter (bacteria)
  • agrobacterium tumefaciens lba4213 (ach5) (bacteria)
KeywordsTRANSPORT PROTEIN / periplasmic binding protein / ABC transporter

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