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Structure paper

TitleUnveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Journal, issue, pagesChemistry, Vol. 24, Page 9739-9746, Year 2018
Publish dateNov 24, 2017 (structure data deposition date)
AuthorsEngilberge, S. / Riobe, F. / Wagner, T. / Di Pietro, S. / Breyton, C. / Franzetti, B. / Shima, S. / Girard, E. / Dumont, E. / Maury, O.
External linksChemistry / PubMed:29806881
MethodsX-ray diffraction
Resolution1.2 - 2.2 Å
Structure data

PDB-6f2f:
Crystal structure of Protease 1 from Pyrococcus Horikoshii co-cystallized in presence of 10 mM Tb-Xo4 and ammonium sulfate.
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-6f2h:
Structure of Protease 1 from Pyrococcus horikoshii co-crystallized in presence of 10 mM Tb-Xo4 and potassium iodide.
Method: X-RAY DIFFRACTION / Resolution: 2.19 Å

PDB-6f2i:
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4
Method: X-RAY DIFFRACTION / Resolution: 1.2 Å

PDB-6f2j:
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM sodium sulfate
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-6f2k:
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium phosphate monobasic.
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-6f2m:
Structure of the bacteriophage T5 distal tail protein pb9 co-crystallized with 10mM Tb-Xo4
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-6frm:
Crystal Structure of coenzyme F420H2 oxidase (FprA) co-crystallized with 10 mM Tb-Xo4
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-6frn:
Structure of F420H2 oxidase (FprA) co-crystallized with 10mM Tb-Xo4 and calcium chloride
Method: X-RAY DIFFRACTION / Resolution: 1.74 Å

PDB-6fro:
Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium iodide.
Method: X-RAY DIFFRACTION / Resolution: 1.42 Å

PDB-6frq:
Structure of tetragonal Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM Potassium sodium tartrate tetrahydrate.
Method: X-RAY DIFFRACTION / Resolution: 1.69 Å

Chemicals

ChemComp-7MT:
Tb-Xo4

ChemComp-SO4:
SULFATE ION

ChemComp-TB:
TERBIUM(III) ION

ChemComp-2HA:
Dihydroxyacetone

ChemComp-HOH:
WATER

ChemComp-IOD:
IODIDE ION

ChemComp-CL:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-ACT:
ACETATE ION

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-FMN:
FLAVIN MONONUCLEOTIDE

ChemComp-FE:
Unknown entry

ChemComp-CA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-PE4:
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL / precipitant*YM

Source
  • pyrococcus horikoshii (archaea)
  • gallus gallus (chicken)
  • escherichia phage t5 (virus)
  • methanothermococcus thermolithotrophicus (archaea)
KeywordsCELL CYCLE / Lanthanide complexes / Tb-Xo4 / Crystallophore / Phasing / nucleation / HYDROLASE / Protease / VIRAL PROTEIN / phage protein / OXIDOREDUCTASE / FprA / anomalous / protein nucleation

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