Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Structure-activity relationship and crystallographic analyses of non-secosteroidal vitamin D receptor ligands bearing diphenylsilane core as a hydrophobic pharmacophore
Journal, issue, pages	Bioorg. Med. Chem., Page 118261-, Year 2025
Publish date	Feb 25, 2025 (structure data deposition date)
Authors	Mudiyanselage, H.N.T.N. / Misawa, T. / Ochiai, K. / Demizu, Y. / Hanazono, Y. / Ito, N. / Fujii, S.
External links	Bioorg. Med. Chem. / Search PubMed
Methods	X-ray diffraction
Resolution	1.44 - 2.18 Å
Structure data	PDB-9m10: Vitamin D receptor complex with a dimethylbis((3-trifluoromethyl)phenyl)silane derivative Method: X-RAY DIFFRACTION / Resolution: 2.02 Å PDB-9m11: Vitamin D receptor complex with a bis(3-chlorophenyl)dimethylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 2.05 Å PDB-9m12: Vitamin D receptor complex with a bis(3-ethylphenyl)dimethylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.86 Å PDB-9m13: Vitamin D receptor complex with a dimethyldiphenylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.68 Å PDB-9m14: Vitamin D receptor complex with a dimethyldi(m-tolyl)silane derivative Method: X-RAY DIFFRACTION / Resolution: 2 Å PDB-9m15: Vitamin D receptor complex with a dimethyldi(o-tolyl)silane derivative Method: X-RAY DIFFRACTION / Resolution: 2.18 Å PDB-9m16: Vitamin D receptor complex with a bis(2,3-dimethylphenyl)dimethylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 2.06 Å PDB-9m17: Vitamin D receptor complex with a bis(3,5-dimethylphenyl)dimethylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.81 Å PDB-9m18: Vitamin D receptor complex with a diallyldiphenylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.96 Å PDB-9m19: Vitamin D receptor complex with a dibutyldiphenylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 2.05 Å PDB-9m1a: Vitamin D receptor complex with a diethyldiphenylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.78 Å PDB-9m1b: Vitamin D receptor complex with a diphenydipropylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.77 Å PDB-9m1c: Vitamin D receptor complex with a triphenylpropylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.67 Å PDB-9m1d: Vitamin D receptor complex with a methyldiphenylpropylsilane derivative Method: X-RAY DIFFRACTION / Resolution: 1.44 Å
Chemicals	PDB-1l7x: Human liver glycogen phosphorylase b complexed with caffeine, N-acetyl-beta-D-glucopyranosylamine, and CP-403,700 ChemComp-HOH: WATER PDB-1l7y: Solution NMR Structure of C. elegans Protein ZK652.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR41. PDB-1l7z: Crystal structure of Ca2+/Calmodulin complexed with myristoylated CAP-23/NAP-22 peptide PDB-1l70: MULTIPLE STABILIZING ALANINE REPLACEMENTS WITHIN ALPHA-HELIX 126-134 OF T4 LYSOZYME HAVE INDEPENDENT, ADDITIVE EFFECTS ON BOTH STRUCTURE AND STABILITY PDB-1l71: MULTIPLE STABILIZING ALANINE REPLACEMENTS WITHIN ALPHA-HELIX 126-134 OF T4 LYSOZYME HAVE INDEPENDENT, ADDITIVE EFFECTS ON BOTH STRUCTURE AND STABILITY PDB-1l73: MULTIPLE STABILIZING ALANINE REPLACEMENTS WITHIN ALPHA-HELIX 126-134 OF T4 LYSOZYME HAVE INDEPENDENT, ADDITIVE EFFECTS ON BOTH STRUCTURE AND STABILITY PDB-1l74: MULTIPLE STABILIZING ALANINE REPLACEMENTS WITHIN ALPHA-HELIX 126-134 OF T4 LYSOZYME HAVE INDEPENDENT, ADDITIVE EFFECTS ON BOTH STRUCTURE AND STABILITY PDB-1l75: MULTIPLE STABILIZING ALANINE REPLACEMENTS WITHIN ALPHA-HELIX 126-134 OF T4 LYSOZYME HAVE INDEPENDENT, ADDITIVE EFFECTS ON BOTH STRUCTURE AND STABILITY PDB-1l76: TOLERANCE OF T4 LYSOZYME TO PROLINE SUBSTITUTIONS WITHIN THE LONG INTERDOMAIN ALPHA-HELIX ILLUSTRATES THE ADAPTABILITY OF PROTEINS TO POTENTIALLY DESTABILIZING LESIONS PDB-1l77: DESIGN AND STRUCTURAL ANALYSIS OF ALTERNATIVE HYDROPHOBIC CORE PACKING ARRANGEMENTS IN BACTERIOPHAGE T4 LYSOZYME PDB-1l78: Unknown entry PDB-1l79: DESIGN AND STRUCTURAL ANALYSIS OF ALTERNATIVE HYDROPHOBIC CORE PACKING ARRANGEMENTS IN BACTERIOPHAGE T4 LYSOZYME PDB-1l8a: E. COLI PYRUVATE DEHYDROGENASE PDB-1l8b: Cocrystal Structure of the Messenger RNA 5' Cap-binding Protein (eIF4E) bound to 7-methylGpppG
Source	rattus norvegicus (Norway rat) homo sapiens (human)
Keywords	TRANSCRIPTION / Vitamin D receptor