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Structure paper

TitleSideways lipid presentation by the antigen-presenting molecule CD1c.
Journal, issue, pagesNat Commun, Year 2025
Publish dateMay 5, 2025 (structure data deposition date)
AuthorsCao, T.P. / Liao, G.R. / Cheng, T.Y. / Chen, Y. / Ciacchi, L. / Fulford, T.S. / Farquhar, R. / Kollmorgen, J. / Mayfield, J.A. / Uldrich, A.P. ...Cao, T.P. / Liao, G.R. / Cheng, T.Y. / Chen, Y. / Ciacchi, L. / Fulford, T.S. / Farquhar, R. / Kollmorgen, J. / Mayfield, J.A. / Uldrich, A.P. / Ng, E.Z.Q. / Ogg, G.S. / Godfrey, D.I. / Gherardin, N.A. / Chen, Y.L. / Moody, D.B. / Shahine, A. / Rossjohn, J.
External linksNat Commun / PubMed:41476042
MethodsX-ray diffraction
Resolution1.68 - 2.98 Å
Structure data

PDB-9oht:
CD1c presenting GD3 ganglioside
Method: X-RAY DIFFRACTION / Resolution: 2.98 Å

PDB-9ohu:
CD1c presenting GM3 ganglioside
Method: X-RAY DIFFRACTION / Resolution: 2.9 Å

PDB-9ohv:
CD1c presenting dual lipids MPM and GD3 ganglioside
Method: X-RAY DIFFRACTION / Resolution: 2.12 Å

PDB-9ohw:
CD1c presenting GM1 ganglioside
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-9ohx:
CD1c presenting endogenous lipids
Method: X-RAY DIFFRACTION / Resolution: 1.68 Å

PDB-9ohy:
CD1c presenting phosphomycoketide in its open conformation
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-9ohz:
Crystal structure of CD1a presenting ganglioside GD3
Method: X-RAY DIFFRACTION / Resolution: 2.14 Å

PDB-9oi0:
Crystal structure of CD1b presenting ganglioside GD3
Method: X-RAY DIFFRACTION / Resolution: 1.84 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

PDB-1cb5:
HUMAN BLEOMYCIN HYDROLASE.

ChemComp-KZF:
2-(cyclohexylazaniumyl)ethanesulfonate / pH buffer*YM

ChemComp-MLA:
MALONIC ACID

PDB-1cb4:
CRYSTAL STRUCTURE OF COPPER, ZINC SUPEROXIDE DISMUTASE

ChemComp-CL:
Unknown entry

PDB-1cb6:
STRUCTURE OF HUMAN APOLACTOFERRIN AT 2.0 A RESOLUTION.

ChemComp-MK0:
1-O-[(S)-hydroxy{[(4S,8S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-beta-D-mannopyranose

ChemComp-HOH:
WATER

ChemComp-GGG:
glycylglycylglycine

PDB-1cb7:
GLUTAMATE MUTASE FROM CLOSTRIDIUM COCHLEARIUM RECONSTITUTED WITH METHYL-COBALAMIN

ChemComp-EKG:
(2R)-2,3-dihydroxypropyl hexadecanoate

ChemComp-D10:
DECANE

ChemComp-D12:
DODECANE

ChemComp-R16:
HEXADECANE


ChemComp, No image

ChemComp-Z7B:
Unknown entry

PDB-1cb9:
NMR STRUCTURE WITH TIGHTLY BOUND WATER MOLECULES OF CYTOTOXIN II (CARDIOTOXIN) FROM NAJA NAJA OXIANA IN AQUEOUS SOLUTION (MAJOR FORM).

ChemComp-IOD:
IODIDE ION

ChemComp-EDO:
1,2-ETHANEDIOL

PDB-1cdl:
TARGET ENZYME RECOGNITION BY CALMODULIN: 2.4 ANGSTROMS STRUCTURE OF A CALMODULIN-PEPTIDE COMPLEX

ChemComp-CUY:
tetracosyl octadecanoate

ChemComp-NA:
Unknown entry

Source
  • homo sapiens (human)
KeywordsLIPID BINDING PROTEIN / CD1c / lipid mediated immunity / lipid antigen presentation / GD3 / ganglioside / GM3 / MPM / mannosyl-phosphomycoketide / dual lipid presentation / lipid antigen presenting molecule / GM1 / IMMUNE SYSTEM / PM / phosphomycoketide / Antigen Presentation / CD1a / lipid / adaptive immunity / CD1b

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