Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Unraveling the molecular mechanism of polysaccharide lyases for efficient alginate degradation.
Journal, issue, pages	Nat Commun, Vol. 16, Page 2670-2670, Year 2025
Publish date	Apr 29, 2020 (structure data deposition date)
Authors	Rivas-Fernandez, J.P. / Vuillemin, M. / Pilgaard, B. / Klau, L.J. / Fredslund, F. / Lund-Hanssen, C. / Welner, D.H. / Meyer, A.S. / Morth, J.P. / Meilleur, F. ...Rivas-Fernandez, J.P. / Vuillemin, M. / Pilgaard, B. / Klau, L.J. / Fredslund, F. / Lund-Hanssen, C. / Welner, D.H. / Meyer, A.S. / Morth, J.P. / Meilleur, F. / Aachmann, F.L. / Rovira, C. / Wilkens, C.
External links	Nat Commun / PubMed:40102416
Methods	X-ray diffraction
Resolution	0.82 - 1.9 Å
Structure data	PDB-6ywf: Crystal structure of Paradendryphiella salina PL7A alginate lyase Method: X-RAY DIFFRACTION / Resolution: 1.9 Å PDB-7ncz: Crystal structure of Paradendryphiella salina PL7A alginate lyase mutant Y223F in complex with hexa-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.64 Å PDB-7nl3: Crystal structure of Paradendryphiella salina PL7A alginate lyase mutant Y223F Method: X-RAY DIFFRACTION / Resolution: 1.7 Å PDB-7nm6: Crystal structure of Paradendryphiella salina PL7A alginate lyase mutant Y223F in complex with di-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.78 Å PDB-7npp: Crystal structure of Paradendryphiella salina PL7A alginate lyase mutant Y223F in complex with penta-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.45 Å PDB-7ny3: Crystal structure of Paradendryphiella salina PL7A alginate lyase mutant Y223F in complex with tetra-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.82 Å PDB-7o6h: Crystal structure of Paradendryphiella salina PL7A alginate lyase mutant Y223F in complex with tri-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.66 Å PDB-7oof: Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with tri-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.3 Å PDB-7ory: Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with penta-mannuronic acid products Method: X-RAY DIFFRACTION / Resolution: 1.46 Å PDB-7p25: Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with hexa-mannuronic acid products Method: X-RAY DIFFRACTION / Resolution: 1.47 Å PDB-7p90: Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with tetra-mannuronic acid products Method: X-RAY DIFFRACTION / Resolution: 1.87 Å PDB-7pbf: Crystal structure of Paradendryphiella salina PL7A alginate lyase in complex with di-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.54 Å PDB-8bjo: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F in complex with hexa-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.51 Å PDB-8bxz: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F in complex with penta-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.2 Å PDB-8c0m: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F Method: X-RAY DIFFRACTION / Resolution: 1.2 Å PDB-8c3x: Crystal structure of Paradendryphiella salina PL7C alginate lyase Method: X-RAY DIFFRACTION / Resolution: 0.82 Å PDB-8p6o: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant Y220F in complex with di-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.05 Å PDB-8pc3: Crystal structure of Paradendryphiella salina PL7C alginate lyase in complex with pentamannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.1 Å PDB-8pc8: Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with hexamannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.24 Å PDB-8pcx: Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with tetramannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.14 Å PDB-8pdt: Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with dimannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.09 Å PDB-8ped: Crystal structure of Paradendryphiella salina PL7C alginate lyase soaked with trimannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.1 Å PDB-8qiz: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124N soaked with with penta-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.13 Å PDB-8qli: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124 soaked with with tetra-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 1.12 Å PDB-8qmj: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124 soaked with hexa-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 0.98 Å PDB-8r43: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H110N in complex with tri-mannuronic acid Method: X-RAY DIFFRACTION / Resolution: 0.87 Å PDB-8rbi: Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124 Method: X-RAY DIFFRACTION / Resolution: 0.98 Å
Chemicals	ChemComp-HOH: WATER ChemComp-BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH bufferYM ChemComp-MAV: alpha-D-mannopyranuronic acid ChemComp-PG4: TETRAETHYLENE GLYCOL / precipitantYM ChemComp-SO4: SULFATE ION ChemComp-ACT: ACETATE ION ChemComp-EDO: 1,2-ETHANEDIOL ChemComp-CL: Unknown entry ChemComp-NA: Unknown entry ChemComp-PEG: DI(HYDROXYETHYL)ETHER
Source	paradendryphiella salina (fungus)
Keywords	LYASE / Alginate lyase / fungal / polysaccharide lyase family 7 / PL7 / complex / beta jelly roll / mutant / beta-jelly roll / beta-jeely roll / mannuronate / beta jelly-roll / Alginate lyase. beta-jelly roll