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TitleStructural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria.
Journal, issue, pagesNucleic Acids Res., Vol. 53, Year 2025
Publish dateMay 3, 2024 (structure data deposition date)
AuthorsMortensen, S. / Kuncova, S. / Lormand, J.D. / Myers, T.M. / Kim, S.K. / Lee, V.T. / Winkler, W.C. / Sondermann, H.
External linksNucleic Acids Res. / PubMed:39778863
MethodsX-ray diffraction
Resolution1.55 - 2.2 Å
Structure data

PDB-9f7d:
Rhodococcus diDNase bound to deoxy-pGG
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-9f7g:
Nocardioides diDNase bound to deoxy-pGG
Method: X-RAY DIFFRACTION / Resolution: 1.55 Å

PDB-9f7j:
Rhodococcus diDNase in apo state
Method: X-RAY DIFFRACTION / Resolution: 1.72 Å

PDB-9f7l:
Bartonella henselae NrnC bound to deoxy-pGG
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-9f7m:
Blastococcus Orn bound to pGG
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

Chemicals

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-NA:
Unknown entry

Source
  • rhodococcus ruber (bacteria)
  • nocardioides sp. s-1144 (bacteria)
  • bartonella henselae (bacteria)
  • blastococcus aggregatus (bacteria)
KeywordsHYDROLASE / DNase DEDDy family Dinuclease / DEDDy family / Dinuclease / DEDD family

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