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Structure paper

TitleA Widespread Radical-Mediated Glycolysis Pathway.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 146, Page 26187-26197, Year 2024
Publish dateFeb 11, 2023 (structure data deposition date)
AuthorsMa, K. / Xue, B. / Chu, R. / Zheng, Y. / Sharma, S. / Jiang, L. / Hu, M. / Xie, Y. / Hu, Y. / Tao, T. ...Ma, K. / Xue, B. / Chu, R. / Zheng, Y. / Sharma, S. / Jiang, L. / Hu, M. / Xie, Y. / Hu, Y. / Tao, T. / Zhou, Y. / Liu, D. / Li, Z. / Yang, Q. / Chen, Y. / Wu, S. / Tong, Y. / Robinson, R.C. / Yew, W.S. / Jin, X. / Liu, Y. / Zhao, H. / Ang, E.L. / Wei, Y. / Zhang, Y.
External linksJ. Am. Chem. Soc. / PubMed:39283600
MethodsX-ray diffraction
Resolution1.8 - 2.65 Å
Structure data

PDB-8id0:
Crystal structure of PflD bound to 1,5-anhydromannitol-6-phosphate in Streptococcus dysgalactiae subsp. equisimilis
Method: X-RAY DIFFRACTION / Resolution: 2.34 Å

PDB-8id7:
Crystal structure of YbiW in complex with 1,5-anhydroglucitol-6-phosphate in Escherichia coli
Method: X-RAY DIFFRACTION / Resolution: 2.65 Å

PDB-8yjn:
Structure of E. coli glycyl radical enzyme YbiW with bound glycerol
Method: X-RAY DIFFRACTION / Resolution: 2.42 Å

PDB-8yjo:
Structure of E. coli glycyl radical enzyme PflD with bound malonate
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals


ChemComp, No image

ChemComp-7P6:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-0WK:
1,5-anhydro-6-O-phosphono-D-glucitol

ChemComp-GOL:
GLYCEROL

ChemComp-MLI:
MALONATE ION

Source
  • streptococcus dysgalactiae subsp. equisimilis (bacteria)
  • escherichia coli str. k-12 substr. mg1655 (bacteria)
  • escherichia coli (strain k12) (bacteria)
KeywordsLYASE / glycyl radical enzyme / PflD / 1 / 5-anhydromannitol-6-phosphate / YbiW / 5-anhydroglucitol-6-phosphate

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