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Structure paper

TitleConstrained Catalytic Itinerary of a Retaining 3,6-Anhydro-D-Galactosidase, a Key Enzyme in Red Algal Cell Wall Degradation.
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 63, Page e202411171-e202411171, Year 2024
Publish dateFeb 12, 2024 (structure data deposition date)
AuthorsWallace, M.D. / Cuxart, I. / Roret, T. / Guee, L. / Debowski, A.W. / Czjzek, M. / Rovira, C. / Stubbs, K.A. / Ficko-Blean, E.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:39022920
MethodsX-ray diffraction
Resolution1.81 - 2.29 Å
Structure data

PDB-8rzg:
ZgGH129 from Zobellia galactanivorans soaked with the product of the reaction ADG (3,6-anhydro-D-galactose).
Method: X-RAY DIFFRACTION / Resolution: 1.81 Å

PDB-8rzh:
ZgGH129 from Zobellia galactanivorans in complex with the inhibitor AD-DGJ (3,6-anhydro-D-1-deoxygalactonojirimycin).
Method: X-RAY DIFFRACTION / Resolution: 1.83 Å

PDB-8rzi:
ZgGH129 from Zobellia galactanivorans soaked with 1,2-diF-ADG (3,6-Anhydro-2-deoxy-2-fluoro-a-D-galactopyranosyl fluoride) resulting in a trapped glycosyl-enzyme intermediate.
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-8rzj:
ZgGH129 from Zobellia galactanivorans in complex with the inhibitor ADG-IF (3,6-anhydro-D-galacto-isofagomine).
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-8rzk:
The Michaelis complex of ZgGH129 D486N from Zobellia galactanivorans with neo-b/k-oligo-carrageenan tetrasaccharide (beta-kappa neo-oligo-carrageenan DP4).
Method: X-RAY DIFFRACTION / Resolution: 2.29 Å

Chemicals

PDB-1h39:
Structures of Human Oxidosqualene Cyclase Inhibitors Bound to an Homologous Enzyme

ChemComp-TLA:
L(+)-TARTARIC ACID

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-NA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PGE:
TRIETHYLENE GLYCOL

ChemComp-HOH:
WATER

PDB-1h38:
Structure of a T7 RNA polymerase elongation complex at 2.9A resolution

ChemComp-16P:
3,6,9,12,15,18-HEXAOXAICOSANE

PDB-1h37:
Structures of Human Oxidosqualene Cyclase Inhibitors Bound to an Homologous Enzyme

PDB-1h36:
Structures of Human Oxidosqualene Cyclase Inhibitors Bound to an Homologous Enzyme

Source
  • zobellia galactanivorans (bacteria)
KeywordsHYDROLASE / 3 / 6-anhydro-D-galactosidase Zobellia galactanivorans carrageenan oligosaccharide 3 / 6-anhydro-D-galactose

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