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Structure paper

TitleTransient interactions modulate the affinity of NF-kappa B transcription factors for DNA.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 121, Page e2405555121-e2405555121, Year 2024
Publish dateApr 12, 2024 (structure data deposition date)
AuthorsLi, T. / Shahabi, S. / Biswas, T. / Tsodikov, O.V. / Pan, W. / Huang, D.B. / Wang, V.Y. / Wang, Y. / Ghosh, G.
External linksProc. Natl. Acad. Sci. USA / PubMed:38805268
MethodsX-ray diffraction
Resolution1.87 - 3.6 Å
Structure data

PDB-9bdu:
NF-kappaB RelA homo-dimer bound to AT-centric kappaB DNA
Method: X-RAY DIFFRACTION / Resolution: 2.03 Å

PDB-9bdv:
NF-kappaB RelA homo-dimer bound to TA-centric kappaB DNA
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-9bdw:
NF-kappaB RelA homo-dimer bound to GC-centric kappaB DNA
Method: X-RAY DIFFRACTION / Resolution: 1.87 Å

PDB-9bdx:
NF-kappaB RelA homo-dimer bound to CG-centric kappaB DNA
Method: X-RAY DIFFRACTION / Resolution: 3.6 Å

PDB-9bdy:
AT-centric NF-kappaB RelA binding DNA
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-9bdz:
TA-centric NF-kappaB RelA binding DNA
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-9be0:
GC-centric NF-kappaB RelA binding DNA
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-9be1:
CG-centric NF-kappaB RelA binding DNA
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-BOG:
octyl beta-D-glucopyranoside / detergent*YM

ChemComp-ZN:
Unknown entry

ChemComp-ACT:
ACETATE ION

Source
  • mus musculus (house mouse)
  • synthetic construct (others)
  • homo sapiens (human)
KeywordsDNA BINDING PROTEIN/DNA / RelA / kappaB DNA / Promoter / Transcription / DNA BINDING PROTEIN / DNA BINDING PROTEIN-DNA complex / DNA

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