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Structure paper

TitleAntibiotic class with potent in vivo activity targeting lipopolysaccharide synthesis in Gram-negative bacteria.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 121, Page e2317274121-e2317274121, Year 2024
Publish dateSep 14, 2023 (structure data deposition date)
AuthorsHuseby, D.L. / Cao, S. / Zamaratski, E. / Sooriyaarachchi, S. / Ahmad, S. / Bergfors, T. / Krasnova, L. / Pelss, J. / Ikaunieks, M. / Loza, E. ...Huseby, D.L. / Cao, S. / Zamaratski, E. / Sooriyaarachchi, S. / Ahmad, S. / Bergfors, T. / Krasnova, L. / Pelss, J. / Ikaunieks, M. / Loza, E. / Katkevics, M. / Bobileva, O. / Cirule, H. / Gukalova, B. / Grinberga, S. / Backlund, M. / Simoff, I. / Leber, A.T. / Berruga-Fernandez, T. / Antonov, D. / Konda, V.R. / Lindstrom, S. / Olanders, G. / Brandt, P. / Baranczewski, P. / Vingsbo Lundberg, C. / Liepinsh, E. / Suna, E. / Jones, T.A. / Mowbray, S.L. / Hughes, D. / Karlen, A.
External linksProc. Natl. Acad. Sci. USA / PubMed:38579010
MethodsX-ray diffraction
Resolution1.35 - 2 Å
Structure data

PDB-8qjz:
Crystal structure of E. coli LpxH in complex with lipid X
Method: X-RAY DIFFRACTION / Resolution: 1.35 Å

PDB-8qk2:
Structure of K.pneumoniae LpxH in complex with EBL-3339
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-8qk5:
Structure of K. pneumoniae LpxH in complex with EBL-3647
Method: X-RAY DIFFRACTION / Resolution: 1.95 Å

PDB-8qk9:
Structure of E. coli LpxH in complex with JEDI-1444
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-8qka:
Structure of K. pneumoniae LpxH in complex with JEDI-852
Method: X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-MN:
Unknown entry

ChemComp-LP5:
(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE

ChemComp-HOH:
WATER


ChemComp, No image

ChemComp-VTF:
Unknown entry


ChemComp, No image

ChemComp-VN6:
Unknown entry


ChemComp, No image

ChemComp-VQ9:
Unknown entry


ChemComp, No image

ChemComp-VTK:
Unknown entry

Source
  • escherichia coli (E. coli)
  • klebsiella pneumoniae (bacteria)
KeywordsHYDROLASE / Lipid A biosynthesis pathway Endotoxin UDP-diacyl-glucosamine Lipid X Gram-negative bacteria Lipopolysaccharides HYDROLASE / Lipid A biosynthesis pathway Endotoxin UDP-diacyl-glucosamine Lipid X Gram-negative bacteria Lipopolysaccharides

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