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Structure paper

TitleMolecular basis for the reversible ADP-ribosylation of guanosine bases.
Journal, issue, pagesMol. Cell, Vol. 83, Page 2303-, Year 2023
Publish dateOct 11, 2022 (structure data deposition date)
AuthorsSchuller, M. / Raggiaschi, R. / Mikolcevic, P. / Rack, J.G.M. / Ariza, A. / Zhang, Y. / Ledermann, R. / Tang, C. / Mikoc, A. / Ahel, I.
External linksMol. Cell / PubMed:37390817
MethodsX-ray diffraction
Resolution1.6 - 2.3 Å
Structure data

PDB-8baq:
E. coli C7 DarT1 in complex with NAD+
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-8bar:
E. coli C7 DarT1 in complex with ADP-ribosylated ssDNA and nicotinamide
Method: X-RAY DIFFRACTION / Resolution: 1.63 Å

PDB-8bas:
E. coli C7 DarT1 in complex with carba-NAD and DNA
Method: X-RAY DIFFRACTION / Resolution: 1.92 Å

PDB-8bat:
Geobacter lovleyi NADAR
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-8bau:
Phytophthora nicotianae var. parasitica NADAR in complex with ADP-ribose
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

Chemicals

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-HOH:
WATER

ChemComp-NCA:
NICOTINAMIDE / medication*YM

ChemComp-APR:
ADENOSINE-5-DIPHOSPHORIBOSE

ChemComp-CNA:
CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE

ChemComp-CL:
Unknown entry

ChemComp-AR6:
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL

Source
  • escherichia coli (E. coli)
  • trichlorobacter lovleyi (bacteria)
  • phytophthora nicotianae var. parasitica (black shank of tobacco agent)
KeywordsTOXIN / TOXIN-ANTITOXIN / DNA ADP-RIBOSYLATION / ADP-ribosyltransferase activity / DNA binding / HYDROLASE / ANTITOXIN

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