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TitleA bacterial sulfoglycosidase highlights mucin O-glycan breakdown in the gut ecosystem.
Journal, issue, pagesNat. Chem. Biol., Vol. 19, Page 778-789, Year 2023
Publish dateDec 22, 2021 (structure data deposition date)
AuthorsKatoh, T. / Yamada, C. / Wallace, M.D. / Yoshida, A. / Gotoh, A. / Arai, M. / Maeshibu, T. / Kashima, T. / Hagenbeek, A. / Ojima, M.N. ...Katoh, T. / Yamada, C. / Wallace, M.D. / Yoshida, A. / Gotoh, A. / Arai, M. / Maeshibu, T. / Kashima, T. / Hagenbeek, A. / Ojima, M.N. / Takada, H. / Sakanaka, M. / Shimizu, H. / Nishiyama, K. / Ashida, H. / Hirose, J. / Suarez-Diez, M. / Nishiyama, M. / Kimura, I. / Stubbs, K.A. / Fushinobu, S. / Katayama, T.
External linksNat. Chem. Biol. / PubMed:36864192
MethodsX-ray diffraction
Resolution1.65 - 2.23 Å
Structure data

PDB-7wdt:
6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with GlcNAc-6S
Method: X-RAY DIFFRACTION / Resolution: 1.65 Å

PDB-7wdu:
6-sulfo-beta-D-N-acetylglucosaminidase from Bifidobacterium bifidum in complex with PUGNAc-6S
Method: X-RAY DIFFRACTION / Resolution: 2.23 Å

Chemicals

ChemComp-NGS:
2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose

ChemComp-NGY:
2-acetamido-2-deoxy-6-O-sulfo-alpha-D-glucopyranose

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-8R9:
[[(3R,4R,5S,6R)-3-acetamido-4,5-bis(oxidanyl)-6-(sulfooxymethyl)oxan-2-ylidene]amino] N-phenylcarbamate

Source
  • bifidobacterium bifidum jcm 1254 (bacteria)
KeywordsHYDROLASE / Glycoside Hydrolase family 20

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