Database of articles cited by EMDB/PDB/SASBDB data

Keywords
Structure methods	All X-ray diffraction NMR electron microscopy small angle scattering neutron diffraction fiber diffraction powder diffraction infrared spectroscopy EPR fluorescence transfer theoretical model Hybrid
Author
Journal
IF	>30 >20 >10 >5 all

Title	Near-atomic, non-icosahedrally averaged structure of giant virus Paramecium bursaria chlorella virus 1.
Journal, issue, pages	Nat Commun, Vol. 13, Issue 1, Page 6476, Year 2022
Publish date	Oct 29, 2022
Authors	Qianqian Shao / Irina V Agarkova / Eric A Noel / David D Dunigan / Yunshu Liu / Aohan Wang / Mingcheng Guo / Linlin Xie / Xinyue Zhao / Michael G Rossmann / James L Van Etten / Thomas Klose / Qianglin Fang /
PubMed Abstract	Giant viruses are a large group of viruses that infect many eukaryotes. Although components that do not obey the overall icosahedral symmetry of their capsids have been observed and found to play ...Giant viruses are a large group of viruses that infect many eukaryotes. Although components that do not obey the overall icosahedral symmetry of their capsids have been observed and found to play critical roles in the viral life cycles, identities and high-resolution structures of these components remain unknown. Here, by determining a near-atomic-resolution, five-fold averaged structure of Paramecium bursaria chlorella virus 1, we unexpectedly found the viral capsid possesses up to five major capsid protein variants and a penton protein variant. These variants create varied capsid microenvironments for the associations of fibers, a vesicle, and previously unresolved minor capsid proteins. Our structure reveals the identities and atomic models of the capsid components that do not obey the overall icosahedral symmetry and leads to a model for how these components are assembled and initiate capsid assembly, and this model might be applicable to many other giant viruses.
External links	Nat Commun / PubMed:36309542 / PubMed Central
Methods	EM (single particle)
Resolution	3.8 - 4.9 Å
Structure data	34438 8h2i EMDB-34438, PDB-8h2i: Near-atomic structure of five-fold averaged PBCV-1 capsid Method: EM (single particle) / Resolution: 3.8 Å EMDB-34439: Five-fold averaged cryo-EM reconstruction of PBCV-1 before applying the "block-based" reconstruction method Method: EM (single particle) / Resolution: 4.9 Å EMDB-35326: Cryo-EM reconstruction of PBCV-1 capsid block 1 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35490: Cryo-EM reconstruction of PBCV-1 capsid block 2 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35585: Cryo-EM reconstruction of PBCV-1 capsid block 3 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35586: Cryo-EM reconstruction of PBCV-1 capsid block 4 Method: EM (single particle) / Resolution: 3.8 Å EMDB-35589: Cryo-EM reconstruction of PBCV-1 capsid block 5 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35593: Cryo-EM reconstruction of PBCV-1 capsid block 6 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35594: Cryo-EM reconstruction of PBCV-1 capsid block 8 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35644: Cryo-EM reconstruction of PBCV-1 capsid block 9 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35645: Cryo-EM reconstruction of PBCV-1 capsid block 7 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35646: Cryo-EM reconstruction of PBCV-1 capsid block 10 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35647: Cryo-EM reconstruction of PBCV-1 capsid block 11 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35648: Cryo-EM reconstruction of PBCV-1 capsid block 12 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35650: Cryo-EM reconstruction of PBCV-1 capsid block 13 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35656: Cryo-EM reconstruction of PBCV-1 capsid block 14 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35659: Cryo-EM reconstruction of PBCV-1 capsid block 15 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35695: Cryo-EM reconstruction of PBCV-1 capsid block 16 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35954: Cryo-EM reconstruction of PBCV-1 capsid block 17 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35955: Cryo-EM reconstruction of PBCV-1 capsid block 18 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35956: Cryo-EM reconstruction of PBCV-1 capsid block 19 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35957: Cryo-EM reconstruction of PBCV-1 capsid block 20 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35958: Cryo-EM reconstruction of PBCV-1 capsid block 21 Method: EM (single particle) / Resolution: 3.9 Å EMDB-35959: Cryo-EM reconstruction of PBCV-1 capsid block 22 Method: EM (single particle) / Resolution: 3.8 Å EMDB-35960: Cryo-EM reconstruction of PBCV-1 capsid block 23 Method: EM (single particle) / Resolution: 3.8 Å
Source	paramecium bursaria chlorella virus 1
Keywords	VIRAL PROTEIN / giant virus / nucleocytoplasmic large DNA viruses (NCLDVs) / viral assembly / Paramecium bursaria chlorella virus 1 (PBCV-1) / chlorovirus / major capsid protein / minor capsid protein / VIRUS