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Structure paper

TitleQuantitative fragmentomics allow affinity mapping of interactomes.
Journal, issue, pagesNat Commun, Vol. 13, Page 5472-5472, Year 2022
Publish dateJul 19, 2021 (structure data deposition date)
AuthorsGogl, G. / Zambo, B. / Kostmann, C. / Cousido-Siah, A. / Morlet, B. / Durbesson, F. / Negroni, L. / Eberling, P. / Jane, P. / Nomine, Y. ...Gogl, G. / Zambo, B. / Kostmann, C. / Cousido-Siah, A. / Morlet, B. / Durbesson, F. / Negroni, L. / Eberling, P. / Jane, P. / Nomine, Y. / Zeke, A. / Ostergaard, S. / Monsellier, E. / Vincentelli, R. / Trave, G.
External linksNat Commun / PubMed:36115835
MethodsX-ray diffraction
Resolution1.85 - 2.6 Å
Structure data

PDB-7p70:
The PDZ-domain of SNTB1 complexed with the PDZ-binding motif of HPV35-E6
Method: X-RAY DIFFRACTION / Resolution: 2.0 Å

PDB-7p71:
The PDZ domain of MAGI1_2 complexed with the PDZ-binding motif of HPV35-E6
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-7p72:
The PDZ domain of SNX27 complexed with the PDZ-binding motif of MERS-E
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-7p73:
The PDZ domain of SYNJ2BP complexed with the PDZ-binding motif of HTLV1-TAX1
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-7p74:
The PDZ domain of SYNJ2BP complexed with the phosphorylated PDZ-binding motif of RSK1
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-CIT:
CITRIC ACID

Source
  • homo sapiens (human)
  • human papillomavirus 35
  • middle east respiratory syndrome-related coronavirus (isolate united kingdom/h123990006/2012)
  • human t-cell leukemia virus 1 (strain japan atk-1 subtype a)
KeywordsPEPTIDE BINDING PROTEIN / PDZ / complex

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