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Structure paper

TitleMolecular basis for DarT ADP-ribosylation of a DNA base.
Journal, issue, pagesNature, Vol. 596, Page 597-602, Year 2021
Publish dateMay 24, 2021 (structure data deposition date)
AuthorsSchuller, M. / Butler, R.E. / Ariza, A. / Tromans-Coia, C. / Jankevicius, G. / Claridge, T.D.W. / Kendall, S.L. / Goh, S. / Stewart, G.R. / Ahel, I.
External linksNature / PubMed:34408320
MethodsX-ray diffraction
Resolution1.29 - 2.96 Å
Structure data

PDB-7omu:
Thermosipho africanus DarTG in complex with ADP-ribose
Method: X-RAY DIFFRACTION / Resolution: 2.96 Å

PDB-7omv:
Thermus sp. 2.9 DarT
Method: X-RAY DIFFRACTION / Resolution: 1.29 Å

PDB-7omw:
Thermus sp. 2.9 DarT in complex with NAD+
Method: X-RAY DIFFRACTION / Resolution: 1.3 Å

PDB-7omx:
Thermus sp. 2.9 DarT in complex with carba-NAD+
Method: X-RAY DIFFRACTION / Resolution: 1.52 Å

PDB-7omy:
Thermus sp. 2.9 DarT in complex with carba-NAD+ and ssDNA
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-7omz:
Thermus sp. 2.9 DarT in complex with ADP-ribosylated ssDNA and nicotinamide
Method: X-RAY DIFFRACTION / Resolution: 1.66 Å

PDB-7on0:
Thermus sp. 2.9 DarT in complex with ADP-ribosylated ssDNA
Method: X-RAY DIFFRACTION / Resolution: 1.46 Å

Chemicals

ChemComp-APR:
ADENOSINE-5-DIPHOSPHORIBOSE

ChemComp-SCN:
THIOCYANATE ION

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-GOL:
GLYCEROL

ChemComp-CNA:
CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE

ChemComp-NCA:
NICOTINAMIDE / medication*YM

ChemComp-AR6:
[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL

Source
  • thermosipho africanus (bacteria)
  • thermus sp. 2.9 (bacteria)
KeywordsTOXIN / TOXIN-ANTITOXIN / DNA ADP-RIBOSYLATION / ADP-RIBOSE / MACRODOMAIN / ADP-ribosyl transferase / ADP-ribosyltransferase activity / DNA binding

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