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Structure paper

TitleThe structural basis for high-affinity uptake of lignin-derived aromatic compounds by proteobacterial TRAP transporters.
Journal, issue, pagesFebs J., Vol. 289, Page 436-456, Year 2022
Publish dateMar 1, 2021 (structure data deposition date)
AuthorsBisson, C. / Salmon, R.C. / West, L. / Rafferty, J.B. / Hitchcock, A. / Thomas, G.H. / Kelly, D.J.
External linksFebs J. / PubMed:34375507
MethodsX-ray diffraction
Resolution1.1 - 2.13 Å
Structure data

PDB-7nqg:
The structure of the SBP TarP_Rhp in complex with 4-hydroxyphenylacetate
Method: X-RAY DIFFRACTION / Resolution: 1.1 Å

PDB-7nr2:
The structure of the SBP TarP_Sse in complex with coumarate
Method: X-RAY DIFFRACTION / Resolution: 2.13 Å

PDB-7nra:
The structure of the SBP TarP_Sse in complex with cinnamate
Method: X-RAY DIFFRACTION / Resolution: 1.91 Å

PDB-7nrr:
The structure of the SBP TarP_Csal in complex with caffeate
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-7nsw:
The structure of the SBP TarP_Csal in complex with coumarate
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-7ntd:
The structure of the SBP TarP_Csal in complex with ferulate
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

PDB-7nte:
The structure of an open conformation of the SBP TarP_Csal
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

Chemicals

ChemComp-4HP:
4-HYDROXYPHENYLACETATE

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-HC4:
4'-HYDROXYCINNAMIC ACID

ChemComp-HCI:
HYDROCINNAMIC ACID

ChemComp-MG:
Unknown entry

ChemComp-DHC:
CAFFEIC ACID

ChemComp-FER:
3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID

Source
  • rhodopseudomonas palustris (strain atcc baa-98 / cga009) (phototrophic)
  • sagittula stellata e-37 (bacteria)
  • chromohalobacter salexigens (strain atcc baa-138 / dsm 3043 / cip 106854 / ncimb 13768 / 1h11) (bacteria)
KeywordsTRANSPORT PROTEIN / periplasmic binding protein / TRAP transporter / solute binding protein / hydroxycinnamate / lignin / periplasmic

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