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TitleStructural and functional analysis of gum arabic l-rhamnose-alpha-1,4-d-glucuronate lyase establishes a novel polysaccharide lyase family.
Journal, issue, pagesJ. Biol. Chem., Vol. 297, Page 101001-101001, Year 2021
Publish dateMay 11, 2021 (structure data deposition date)
AuthorsKondo, T. / Kichijo, M. / Maruta, A. / Nakaya, M. / Takenaka, S. / Arakawa, T. / Fushinobu, S. / Sakamoto, T.
External linksJ. Biol. Chem. / PubMed:34303708
MethodsX-ray diffraction
Resolution1.05 - 2.42 Å
Structure data

PDB-7esk:
Crystal structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, Ligand free form
Method: X-RAY DIFFRACTION / Resolution: 1.05 Å

PDB-7esl:
Crystal structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, N247A N-glycan free form
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-7esm:
Crystal structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, L-Rha complex
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-7esn:
Crystal structure of a L-rhamnose-alpha-1,4-D-glucuronate lyase from Fusarium oxysporum 12S, H105F Rha-GlcA complex
Method: X-RAY DIFFRACTION / Resolution: 2.42 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-RAM:
alpha-L-rhamnopyranose

ChemComp-ACT:
ACETATE ION

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-SO4:
SULFATE ION

Source
  • fusarium oxysporum (fungus)
KeywordsLYASE / seven-bladed beta-propeller

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