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Structure paper

TitleStructural basis of DNA synthesis opposite 8-oxoguanine by human PrimPol primase-polymerase.
Journal, issue, pagesNat Commun, Vol. 12, Page 4020-4020, Year 2021
Publish dateJul 27, 2020 (structure data deposition date)
AuthorsRechkoblit, O. / Johnson, R.E. / Gupta, Y.K. / Prakash, L. / Prakash, S. / Aggarwal, A.K.
External linksNat Commun / PubMed:34188055
MethodsX-ray diffraction
Resolution2.07 - 2.62 Å
Structure data

PDB-7jk1:
Human PrimPol inserting correct dCTP opposite the 8-oxoguanine lesion
Method: X-RAY DIFFRACTION / Resolution: 2.62 Å

PDB-7jkl:
Human PrimPol misinserting dATP opposite the 8-oxoguanine lesion (3'-end base of the primer strand is 2',3'-dideoxy-terminated).
Method: X-RAY DIFFRACTION / Resolution: 2.384 Å

PDB-7jkp:
Human PrimPol misinserting dATP opposite the 8-oxoguanine lesion
Method: X-RAY DIFFRACTION / Resolution: 2.592 Å

PDB-7jl8:
Human PrimPol extending from the correct primer base C opposite the 8-oxoguanine lesion
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-7jlg:
Human PrimPol extending from the erroneous primer base A opposite the 8-oxoguanine lesion
Method: X-RAY DIFFRACTION / Resolution: 2.07 Å

Chemicals

ChemComp-DCP:
2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE

ChemComp-CA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-DTP:
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • homo sapiens (human)
  • synthetic construct (others)
KeywordsTRANSFERASE/DNA / Translesion / DNA synthesis / DNA Replication / DNA damage / TRANSFERASE / TRANSFERASE-DNA complex

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