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TitleMn 2+ coordinates Cap-0-RNA to align substrates for efficient 2'- O -methyl transfer by SARS-CoV-2 nsp16.
Journal, issue, pagesSci. Signal., Vol. 14, Year 2021
Publish dateSep 1, 2020 (structure data deposition date)
AuthorsMinasov, G. / Rosas-Lemus, M. / Shuvalova, L. / Inniss, N.L. / Brunzelle, J.S. / Daczkowski, C.M. / Hoover, P. / Mesecar, A.D. / Satchell, K.J.F.
External linksSci. Signal. / PubMed:34131072
MethodsX-ray diffraction
Resolution1.78 - 2.05 Å
Structure data

PDB-7jyy:
Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA)pUpUpApApA (Cap-0) and S-Adenosylmethionine (SAM).
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-7l6r:
Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1), S-Adenosyl-L-homocysteine (SAH) and Manganese (Mn).
Method: X-RAY DIFFRACTION / Resolution: 1.98 Å

PDB-7l6t:
Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1), S-Adenosyl-L-homocysteine (SAH) and two Magnesium (Mg) ions.
Method: X-RAY DIFFRACTION / Resolution: 1.78 Å

Chemicals

ChemComp-SAM:
S-ADENOSYLMETHIONINE

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-FMT:
FORMIC ACID

ChemComp-ZN:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

ChemComp-SO4:
SULFATE ION

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE

ChemComp-GLC:
alpha-D-glucopyranose

ChemComp-BDF:
beta-D-fructopyranose

Source
  • severe acute respiratory syndrome coronavirus 2
  • synthetic construct (others)
KeywordsVIRAL PROTEIN/RNA / Structural Genomics / Center for Structural Genomics of Infectious Diseases / CSGID / nsp16 / nsp10 / complex / VIRAL PROTEIN / SAM / cap-0 / VIRAL PROTEIN-RNA complex / SAH / Cap-1

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