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TitleStructural and functional studies on Salmonella typhimurium pyridoxal kinase: the first structural evidence for the formation of Schiff base with the substrate.
Journal, issue, pagesFebs J., Vol. 286, Page 3684-3700, Year 2019
Publish dateMay 14, 2018 (structure data deposition date)
AuthorsDeka, G. / Kalyani, J.N. / Jahangir, F.B. / Sabharwal, P. / Savithri, H.S. / Murthy, M.R.N.
External linksFebs J. / PubMed:31116912
MethodsX-ray diffraction
Resolution2.2 - 2.6 Å
Structure data

PDB-5zw9:
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-5zwa:
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium in complex with ADP, PL-linked to Lys233 via Schiff base in protomer A and the product (PLP) in protomer B
Method: X-RAY DIFFRACTION / Resolution: 2.45 Å

PDB-5zwb:
Crystal structure of Pyridoxal kinase (PdxK) from Salmonella typhimurium in complex with ADP, PL-linked to Lys233 via a Schiff base
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-MG:
Unknown entry

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-PE4:
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-SO4:
SULFATE ION

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-GOL:
GLYCEROL

ChemComp-PLP:
PYRIDOXAL-5'-PHOSPHATE

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

Source
  • salmonella choleraesuis (bacteria)
  • salmonella enterica (bacteria)
KeywordsTRANSFERASE / Pyridoxal kinase / bound phosphate / Salmonella typhimurium / Schiff base linked- Pyridoxal

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