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Structure paper

TitleSuicide inactivation of the uracil DNA glycosylase UdgX by covalent complex formation.
Journal, issue, pagesNat. Chem. Biol., Vol. 15, Page 615-622, Year 2019
Publish dateOct 29, 2018 (structure data deposition date)
AuthorsTu, J. / Chen, R. / Yang, Y. / Cao, W. / Xie, W.
External linksNat. Chem. Biol. / PubMed:31101915
MethodsX-ray diffraction
Resolution1.624 - 2.15 Å
Structure data

PDB-6io9:
The structure of apo-UdgX
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-6ioa:
The structure of UdgX in complex with uracil
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-6iob:
The structure of the H109A mutant of UdgX in complex with uracil
Method: X-RAY DIFFRACTION / Resolution: 2.002 Å

PDB-6ioc:
The structure of the H109Q mutant of UdgX in complex with uracil
Method: X-RAY DIFFRACTION / Resolution: 1.624 Å

PDB-6iod:
The structure of UdgX in complex with single-stranded DNA
Method: X-RAY DIFFRACTION / Resolution: 1.66 Å

Chemicals

ChemComp-SF4:
IRON/SULFUR CLUSTER

ChemComp-SO4:
SULFATE ION

ChemComp-HOH:
WATER

ChemComp-URA:
URACIL

Source
  • mycobacterium smegmatis mc2 155 (bacteria)
  • mycolicibacterium smegmatis mc2 155 (bacteria)
  • mycobacterium smegmatis (bacteria)
KeywordsHYDROLASE / uracil DNA glycosylase / DNA repair / iron-sulfur / DNA BINDING PROTEIN / DNA BINDING PROTEIN/DNA / DNA BINDING PROTEIN-DNA complex

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