[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

+
Search query

Keywords
Structure methods
Author
Journal
IF

-
Structure paper

TitleThe structure of a membrane adenylyl cyclase bound to an activated stimulatory G protein.
Journal, issue, pagesScience, Vol. 364, Issue 6438, Page 389-394, Year 2019
Publish dateApr 26, 2019
AuthorsChao Qi / Simona Sorrentino / Ohad Medalia / Volodymyr M Korkhov /
PubMed AbstractMembrane-integral adenylyl cyclases (ACs) are key enzymes in mammalian heterotrimeric GTP-binding protein (G protein)-dependent signal transduction, which is important in many cellular processes. ...Membrane-integral adenylyl cyclases (ACs) are key enzymes in mammalian heterotrimeric GTP-binding protein (G protein)-dependent signal transduction, which is important in many cellular processes. Signals received by the G protein-coupled receptors are conveyed to ACs through G proteins to modulate the levels of cellular cyclic adenosine monophosphate (cAMP). Here, we describe the cryo-electron microscopy structure of the bovine membrane AC9 bound to an activated G protein αs subunit at 3.4-angstrom resolution. The structure reveals the organization of the membrane domain and helical domain that spans between the membrane and catalytic domains of AC9. The carboxyl-terminal extension of the catalytic domain occludes both the catalytic and the allosteric sites of AC9, inducing a conformation distinct from the substrate- and activator-bound state, suggesting a regulatory role in cAMP production.
External linksScience / PubMed:31023924
MethodsEM (single particle)
Resolution3.1 - 4.2 Å
Structure data

EMDB-4719, PDB-6r3q:
The structure of a membrane adenylyl cyclase bound to an activated stimulatory G protein
Method: EM (single particle) / Resolution: 3.4 Å

EMDB-4721, PDB-6r4o:
Structure of a truncated adenylyl cyclase bound to MANT-GTP, forskolin and an activated stimulatory Galphas protein
Method: EM (single particle) / Resolution: 4.2 Å

EMDB-4722, PDB-6r4p:
Structure of a soluble domain of adenylyl cyclase bound to an activated stimulatory G protein
Method: EM (single particle) / Resolution: 3.1 Å

EMDB-4723:
Soluble domain of membrane adenylyl cyclase bound to an activated stimulatory G protein, in the presence of MANT-GTP (SOL-M)
Method: EM (single particle) / Resolution: 4.2 Å

EMDB-4724:
Structure of a membrane adenylyl cyclase bound to an activated stimulatory G protein (SOL-C map)
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-4725:
Structure of a membrane adenylyl cyclase bound to an activated stimulatory G protein (AC9-Gas-TM)
Method: EM (single particle) / Resolution: 3.6 Å

EMDB-4726:
The membrane portion of a membrane adenylyl cyclase bound to an activated stimulatory G protein (TM)
Method: EM (single particle) / Resolution: 3.6 Å

Chemicals

ChemComp-GSP:
5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE

ChemComp-MG:
Unknown entry

ChemComp-ONM:
3'-O-(N-METHYLANTHRANILOYL)-GUANOSINE-5'-TRIPHOSPHATE

ChemComp-FOK:
FORSKOLIN / Forskolin

ChemComp-MN:
Unknown entry

Source
  • bos taurus (cattle)
KeywordsMEMBRANE PROTEIN / adenylyl cyclase / G protein / occluded state / MANT-GTP / forskolin

+
About Yorodumi Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jan 31, 2019. EMDB accession codes are about to change! (news from PDBe EMDB page)

EMDB accession codes are about to change! (news from PDBe EMDB page)

  • The allocation of 4 digits for EMDB accession codes will soon come to an end. Whilst these codes will remain in use, new EMDB accession codes will include an additional digit and will expand incrementally as the available range of codes is exhausted. The current 4-digit format prefixed with “EMD-” (i.e. EMD-XXXX) will advance to a 5-digit format (i.e. EMD-XXXXX), and so on. It is currently estimated that the 4-digit codes will be depleted around Spring 2019, at which point the 5-digit format will come into force.
  • The EM Navigator/Yorodumi systems omit the EMD- prefix.

Related info.:Q: What is EMD? / ID/Accession-code notation in Yorodumi/EM Navigator

External links:EMDB Accession Codes are Changing Soon! / Contact to PDBj

+
Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary.
  • This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software).
  • Now, EM Navigator and Yorodumi are based on the updated data.

External links:wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

-
Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.:EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more