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Structure paper

TitleStructural and thermodynamic insights into beta-1,2-glucooligosaccharide capture by a solute-binding protein inListeria innocua.
Journal, issue, pagesJ. Biol. Chem., Vol. 293, Page 8812-8828, Year 2018
Publish dateNov 13, 2017 (structure data deposition date)
AuthorsAbe, K. / Sunagawa, N. / Terada, T. / Takahashi, Y. / Arakawa, T. / Igarashi, K. / Samejima, M. / Nakai, H. / Taguchi, H. / Nakajima, M. / Fushinobu, S.
External linksJ. Biol. Chem. / PubMed:29678880
MethodsX-ray diffraction
Resolution1.6 - 2.2 Å
Structure data

PDB-5ysb:
Crystal structure of beta-1,2-glucooligosaccharide binding protein in ligand-free form
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-5ysd:
Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotriose
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-5yse:
Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophorotetraose
Method: X-RAY DIFFRACTION / Resolution: 1.6 Å

PDB-5ysf:
Crystal structure of beta-1,2-glucooligosaccharide binding protein in complex with sophoropentaose
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-HOH:
WATER

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-MG:
Unknown entry

Source
  • listeria innocua serovar 6a (strain atcc baa-680 / clip 11262) (bacteria)
KeywordsSUGAR BINDING PROTEIN / solute-binding protein / protein-carbohydrate complex / beta-1 / 2-glucooligosaccharide / sophorooligosaccharide / alpha/beta domain

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