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Structure paper

TitleStructural basis for the catalytic mechanism and alpha-ketoglutarate cooperativity of glutamate dehydrogenase.
Journal, issue, pagesJ. Biol. Chem., Vol. 293, Page 6241-6258, Year 2018
Publish dateJun 28, 2017 (structure data deposition date)
AuthorsPrakash, P. / Punekar, N.S. / Bhaumik, P.
External linksJ. Biol. Chem. / PubMed:29540480
MethodsX-ray diffraction
Resolution1.75 - 2.8 Å
Structure data

PDB-5xvi:
Crystal Structure of Aspergillus niger Apo- Glutamate Dehydrogenase
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-5xvv:
Crystal Structure of Forward Inhibited Aspergillus niger Glutamate Dehydrogenase With Both Apo- and Alpha Ketoglutarate Bound Subunits
Method: X-RAY DIFFRACTION / Resolution: 2.25 Å

PDB-5xvx:
Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Alpha-ketoglutarate and NADPH
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-5xw0:
Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Isophthalate and NADPH
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-5xwc:
Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Alpha-iminoglutarate, 2-amino-2-hydroxyglutarate and NADP
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-AKG:
2-OXOGLUTARIC ACID

ChemComp-BME:
BETA-MERCAPTOETHANOL

ChemComp-NDP:
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-8G0:
benzene-1,3-dicarboxylic acid

ChemComp-NAP:
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

ChemComp-8GL:
(2S)-2-azanyl-2-oxidanyl-pentanedioic acid

ChemComp-2IT:
(2Z)-2-iminopentanedioic acid

Source
  • aspergillus niger (mold)
KeywordsOXIDOREDUCTASE / Aspergillus / Glutamate / Dehydrogenase / 2-oxoglutarate / Allostery / Forward Inhibition / 2-Mercaptoethanol / NADPH / Coenzyme / Reaction mechanism / Isophthalate / Inhibition / Glutamate Dehydrogenase / Aspergillus niger / Alpha-iminoglutarate / 2-amino-2-hydroxyglutarate / NADP / Reaction Intermediate

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