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Structure paper

TitleConversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design.
Journal, issue, pagesMol. Cell, Vol. 68, Page 659-672.e9, Year 2017
Publish dateMay 23, 2017 (structure data deposition date)
AuthorsBrouwer, J.M. / Lan, P. / Cowan, A.D. / Bernardini, J.P. / Birkinshaw, R.W. / van Delft, M.F. / Sleebs, B.E. / Robin, A.Y. / Wardak, A. / Tan, I.K. ...Brouwer, J.M. / Lan, P. / Cowan, A.D. / Bernardini, J.P. / Birkinshaw, R.W. / van Delft, M.F. / Sleebs, B.E. / Robin, A.Y. / Wardak, A. / Tan, I.K. / Reljic, B. / Lee, E.F. / Fairlie, W.D. / Call, M.J. / Smith, B.J. / Dewson, G. / Lessene, G. / Colman, P.M. / Czabotar, P.E.
External linksMol. Cell / PubMed:29149594
MethodsX-ray diffraction
Resolution1.224 - 2.802 Å
Structure data

PDB-5vwv:
Bak core latch dimer in complex with Bim-BH3 - Cubic
Method: X-RAY DIFFRACTION / Resolution: 1.897 Å

PDB-5vww:
Bak core latch dimer in complex with Bim-RT - Tetragonal
Method: X-RAY DIFFRACTION / Resolution: 2.802 Å

PDB-5vwx:
Bak core latch dimer in complex with Bim-h0-h3Glt
Method: X-RAY DIFFRACTION / Resolution: 2.489 Å

PDB-5vwy:
Bak core latch dimer in complex with Bim-h3Pc-RT
Method: X-RAY DIFFRACTION / Resolution: 1.555 Å

PDB-5vwz:
Bak in complex with Bim-h3Pc
Method: X-RAY DIFFRACTION / Resolution: 1.622 Å

PDB-5vx0:
Bak in complex with Bim-h3Glg
Method: X-RAY DIFFRACTION / Resolution: 1.599 Å

PDB-5vx1:
Bak L100A
Method: X-RAY DIFFRACTION / Resolution: 1.224 Å

PDB-5vx2:
Mcl-1 in complex with Bim-h3Pc-RT
Method: X-RAY DIFFRACTION / Resolution: 1.851 Å

PDB-5vx3:
Bcl-xL in complex with Bim-h3Pc-RT
Method: X-RAY DIFFRACTION / Resolution: 1.945 Å

Chemicals

ChemComp-TFA:
trifluoroacetic acid

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-CL:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-BR:
BROMIDE ION

ChemComp-IMD:
IMIDAZOLE

ChemComp-PO4:
PHOSPHATE ION

ChemComp-1PG:
2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL

ChemComp-NH4:
AMMONIUM ION

ChemComp-MG:
Unknown entry

Source
  • homo sapiens (human)
  • mus musculus (house mouse)
KeywordsAPOPTOSIS / Bcl-2 Family / Activator / Inhibitor / Mutant / Pro-surivial / Pro-survival

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