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Structure paper

TitleStructure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp.
Journal, issue, pagesNat. Struct. Mol. Biol., Vol. 24, Issue 10, Page 809-815, Year 2017
Publish dateSep 11, 2017
AuthorsCarrie Bernecky / Jürgen M Plitzko / Patrick Cramer
External linksPubMed:28892040 / Publisher's page
MethodsEM (single particle) / X-ray diffraction
Resolution1.098 - 3.8 A
Structure data

EMDB-3817:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC3

EMDB-3815:
Structure of an RNA polymerase II-DSIF transcription elongation complex

EMDB-3816:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC2

EMDB-3818:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC4

EMDB-3819:
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC5

PDB-5oho:
Crystal structure of the KOWx-KOW4 domain of human DSIF

PDB-5ohq:
Crystal structure of the KOW6-KOW7 domain of human DSIF

PDB-5oik:
Structure of an RNA polymerase II-DSIF transcription elongation complex

Chemicals

ChemComp-GOL:
GLYCEROL

ChemComp-CL:
CHLORIDE ION

ChemComp-HOH:
WATER

ChemComp-NA:
SODIUM ION

ChemComp-ZN:
ZINC ION

ChemComp-MG:
MAGNESIUM ION

SourceBos taurus / mammal / ウシ /
Homo sapiens / human
Synthetic construct
KeywordsCryoelectron Microscopy / Crystallography, X-Ray / DNA / Humans / Nuclear Proteins / RNA Polymerase II / SUPT5H protein, human / Transcriptional Elongation Factors / TRANSCRIPTION / RNA polymerase II / transcription elongation

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Three pioneers of this field were awarded Nobel Prize in Chemistry 2017

  • Jacques Dubochet (University of Lausanne, Switzerland) is a pioneer of ice-embedding method of EM specimen (as known as cryo-EM), Most of 3DEM structures in EMDB and PDB are obtained using his method.
  • Joachim Frank (Columbia University, New York, USA) is a pioneer of single particle reconstruction, which is the most used reconstruction method for 3DEM structures in EMDB and EM entries in PDB. And also, he is a develper of Spider, which is one of the most famous software in this field, and is used for some EM Navigor data (e.g. map projection/slice images).
  • Richard Henderson (MRC Laboratory of Molecular Biology, Cambridge, UK) was determined the first biomolecule structure by EM. The first EM entry in PDB, PDB-1brd is determinedby him.

External links: The 2017 Nobel Prize in Chemistry - Press Release

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