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Structure paper

TitleStructure and mechanism of a bacterial host-protein citrullinating virulence factor, Porphyromonas gingivalis peptidylarginine deiminase.
Journal, issue, pagesSci Rep, Vol. 5, Page 11969-11969, Year 2015
Publish dateMar 17, 2015 (structure data deposition date)
AuthorsGoulas, T. / Mizgalska, D. / Garcia-Ferrer, I. / Kantyka, T. / Guevara, T. / Szmigielski, B. / Sroka, A. / Millan, C. / Uson, I. / Veillard, F. ...Goulas, T. / Mizgalska, D. / Garcia-Ferrer, I. / Kantyka, T. / Guevara, T. / Szmigielski, B. / Sroka, A. / Millan, C. / Uson, I. / Veillard, F. / Potempa, B. / Mydel, P. / Sola, M. / Potempa, J. / Gomis-Ruth, F.X.
External linksSci Rep / PubMed:26132828
MethodsX-ray diffraction
Resolution1.4 - 1.8 Å
Structure data

PDB-4yt9:
Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) substrate-unbound.
Method: X-RAY DIFFRACTION / Resolution: 1.5 Å

PDB-4ytb:
Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) in complex with dipeptide Asp-Gln.
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

PDB-4ytg:
Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) mutant C351A in complex with dipeptide Met-Arg.
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-NA:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-ASP:
ASPARTIC ACID

ChemComp-GLN:
GLUTAMINE

ChemComp-PO4:
PHOSPHATE ION

ChemComp-IMD:
IMIDAZOLE

ChemComp-CL:
Unknown entry

ChemComp-AZI:
AZIDE ION

ChemComp-CYS:
CYSTEINE

ChemComp-MET:
METHIONINE

ChemComp-ARG:
ARGININE

Source
  • porphyromonas gingivalis w83 (bacteria)
  • porphyromonas gingivalis (bacteria)
  • porphyromonas gingivalis (strain atcc baa-308 / w83) (bacteria)
KeywordsHYDROLASE / Peptidylarginine deiminase / citrullination

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