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Structure paper

TitleStructures of Escherichia coli DNA adenine methyltransferase (Dam) in complex with a non-GATC sequence: potential implications for methylation-independent transcriptional repression.
Journal, issue, pagesNucleic Acids Res., Vol. 43, Page 4296-4308, Year 2015
Publish dateNov 15, 2014 (structure data deposition date)
AuthorsHorton, J.R. / Zhang, X. / Blumenthal, R.M. / Cheng, X.
External linksNucleic Acids Res. / PubMed:25845600
MethodsX-ray diffraction
Resolution1.96 - 2.69 Å
Structure data

PDB-4rtj:
A non-cognate complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with DNA and Sinefungin
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-4rtk:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with SAH and with DNA Containing Distal Pap Regulon Sequence
Method: X-RAY DIFFRACTION / Resolution: 1.96 Å

PDB-4rtl:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with Sinefungin and with DNA Containing Distal Pap Regulon Sequence
Method: X-RAY DIFFRACTION / Resolution: 2.193 Å

PDB-4rtm:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and with DNA Containing Distal Pap Regulon Sequence
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-4rtn:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoHcy and with DNA Containing Proximal Pap Regulon Sequence
Method: X-RAY DIFFRACTION / Resolution: 2.59 Å

PDB-4rto:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with Sinefungin and with DNA Containing Proximal Pap Regulon Sequence
Method: X-RAY DIFFRACTION / Resolution: 2.69 Å

PDB-4rtp:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and with DNA Containing Proximal Pap Regulon Sequence
Method: X-RAY DIFFRACTION / Resolution: 2.39 Å

PDB-4rtq:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoHcy and a 5-bp non-canonical site (GTTTA )
Method: X-RAY DIFFRACTION / Resolution: 1.997 Å

PDB-4rtr:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and a 5-bp non-canonical site (GTTTA )
Method: X-RAY DIFFRACTION / Resolution: 2.393 Å

PDB-4rts:
Complex of Escherichia coli DNA Adenine Methyltransferase (DAM) with AdoMet and a 5-bp non-canonical site (GTCTA)
Method: X-RAY DIFFRACTION / Resolution: 2.49 Å

Chemicals

ChemComp-SFG:
SINEFUNGIN

ChemComp-EDO:
1,2-ETHANEDIOL / Ethylene glycol

ChemComp-HOH:
WATER / Water

ChemComp-SAH:
S-ADENOSYL-L-HOMOCYSTEINE / S-Adenosyl-L-homocysteine

ChemComp-GOL:
GLYCEROL / Glycerol

ChemComp-SAM:
S-ADENOSYLMETHIONINE / S-Adenosyl methionine

Source
  • escherichia coli (E. coli)
  • synthetic construct (others)
KeywordsTransferase/DNA / DAM METHYLATION / GATC RECOGNITION / BASE FLIPPING / BACTERIAL VIRULENCE / methylation-independent transcriptional repressor / Transferase-DNA complex

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