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Structure paper

TitleCrystal Structure of Apo and Ligand Bound Vibrio choleraeRibokinase (Vc-RK): Role of Monovalent Cation Induced Activation and Structural Flexibility in Sugar Phosphorylation
Journal, issue, pagesAdv Exp Med Biol., Vol. 842, Page 293-307, Year 2015
Publish dateDec 10, 2014 (structure data deposition date)
AuthorsPaul, R. / Patra, M.D. / Sen, U.
External linksAdv Exp Med Biol. / PubMed:25408351
MethodsX-ray diffraction
Resolution1.75 - 3.4 Å
Structure data

PDB-4x8f:
Vibrio cholerae O395 Ribokinase in apo form
Method: X-RAY DIFFRACTION / Resolution: 3.4 Å

PDB-4xck:
Vibrio cholerae O395 Ribokinase complexed with ADP, Ribose and Cesium ion.
Method: X-RAY DIFFRACTION / Resolution: 2.37 Å

PDB-4xda:
Vibrio cholerae O395 Ribokinase complexed with Ribose, ADP and Sodium ion.
Method: X-RAY DIFFRACTION / Resolution: 1.75 Å

Chemicals

ChemComp-RIB:
alpha-D-ribofuranose

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-CS:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-NA:
Unknown entry

Source
  • vibrio cholerae serotype o1 (strain atcc 39541 / classical ogawa 395 / o395) (bacteria)
KeywordsTRANSFERASE / sugar kinase / apo form / kinase / phosphotransfer / sugar binding protein / ribokinase / ribose

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