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Structure paper

TitleStructural basis of coagulation factor V recognition for cleavage by RVV-V
Journal, issue, pagesFebs Lett., Vol. 585, Page 3020-3025, Year 2011
Publish dateJun 1, 2011 (structure data deposition date)
AuthorsNakayama, D. / Ben Ammar, Y. / Miyata, T. / Takeda, S.
External linksFebs Lett. / PubMed:21871889
MethodsX-ray diffraction
Resolution1.8 - 2.55 Å
Structure data

PDB-3s9a:
Russell's viper venom serine proteinase, RVV-V (closed-form)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3s9b:
Russell's viper venom serine proteinase, RVV-V (open-form)
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-3s9c:
Russell's viper venom serine proteinase, RVV-V in complex with the fragment (residues 1533-1546) of human factor V
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3sbk:
Russell's viper venom serine proteinase, RVV-V (PPACK-bound form)
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

Chemicals

ChemComp-NAG:
2-acetamido-2-deoxy-beta-D-glucopyranose

ChemComp-HOH:
WATER

ChemComp-BGC:
beta-D-glucopyranose

ChemComp-GLC:
alpha-D-glucopyranose

ChemComp-ACT:
ACETATE ION

ChemComp-ZN:
Unknown entry

ChemComp-0G6:
D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide

Source
  • daboia russellii siamensis (Siamese Russell's viper)
  • homo sapiens (human)
KeywordsHYDROLASE / serine proteinase / double six-stranded beta-barrels / glycosylation / HYDROLASE/HYDROLASE INHIBITOR / HYDROLASE-HYDROLASE INHIBITOR complex

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