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Structure paper

TitleStructural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli.
Journal, issue, pagesJ. Mol. Biol., Vol. 378, Page 215-226, Year 2008
Publish dateMar 27, 2007 (structure data deposition date)
AuthorsZimmerman, M.D. / Proudfoot, M. / Yakunin, A. / Minor, W.
External linksJ. Mol. Biol. / PubMed:18353368
MethodsX-ray diffraction
Resolution2.1 Å
Structure data

PDB-2paq:
Crystal structure of the 5'-deoxynucleotidase YfbR
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-2par:
Crystal structure of the 5'-deoxynucleotidase YfbR mutant E72A complexed with Co(2+) and TMP
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-2pau:
Crystal structure of the 5'-deoxynucleotidase YfbR mutant E72A complexed with Co(2+) and dAMP
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-CO:
Unknown entry

ChemComp-TMP:
THYMIDINE-5'-PHOSPHATE

ChemComp-PEG:
DI(HYDROXYETHYL)ETHER

ChemComp-D5M:
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE

Source
  • escherichia coli (E. coli)
KeywordsHYDROLASE / Nucleotidase / 5'-deoxynucleotidase / YfbR / HD domain phosphohydrolase / Structural genomics / PSI / Protein Structure Initiative / Midwest Center for Structural Genomics / MCSG

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