[English] 日本語
EMN Papers
- Database of articles cited by 3DEM data entries -

+
Search query

Keywords
Author
Journal
IF

-
Structure paper

TitleHigh-resolution structures of HIV-1 Gag cleavage mutants determine structural switch for virus maturation.
Journal, issue, pagesProc Natl Acad Sci U S A, Vol. 115, Issue 40, Page E9401-E9410, Year 2018
Publish dateOct 2, 2018
AuthorsSimone Mattei / Aaron Tan / Bärbel Glass / Barbara Müller / Hans-Georg Kräusslich / John A G Briggs /
PubMed AbstractHIV-1 maturation occurs via multiple proteolytic cleavages of the Gag polyprotein, causing rearrangement of the virus particle required for infectivity. Cleavage results in beta-hairpin formation at ...HIV-1 maturation occurs via multiple proteolytic cleavages of the Gag polyprotein, causing rearrangement of the virus particle required for infectivity. Cleavage results in beta-hairpin formation at the N terminus of the CA (capsid) protein and loss of a six-helix bundle formed by the C terminus of CA and the neighboring SP1 peptide. How individual cleavages contribute to changes in protein structure and interactions, and how the mature, conical capsid forms, are poorly understood. Here, we employed cryoelectron tomography to determine morphology and high-resolution CA lattice structures for HIV-1 derivatives in which Gag cleavage sites are mutated. These analyses prompt us to revise current models for the crucial maturation switch. Unlike previously proposed, cleavage on either terminus of CA was sufficient, in principle, for lattice maturation, while complete processing was needed for conical capsid formation. We conclude that destabilization of the six-helix bundle, rather than beta-hairpin formation, represents the main determinant of structural maturation.
External linksProc Natl Acad Sci U S A / PubMed:30217893 / PubMed Central
MethodsEM (subtomogram averaging) / EM (tomography)
Resolution3.7 - 24.0 Å
Structure data

EMDB-0164:
Immature CA domain from HIV-1 MA-SP1 Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 4.0 Å

EMDB-0165:
Immature CA domain from HIV-1 MA-CA Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 3.7 Å

EMDB-0166:
Immature CA domain from HIV-1 CA-NC Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 4.5 Å

EMDB-0167:
Mature CA domain hexamer from HIV-1 MA-CA Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 8.3 Å

EMDB-0168:
Mature CA domain hexamer from HIV-1 CA-NC Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 9.7 Å

EMDB-0169:
Mature CA domain hexamer from HIV-1 CA-SP1 Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 7.9 Å

EMDB-0170:
Mature CA domain pentamer from HIV-1 CA-NC Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 22.0 Å

EMDB-0171:
Mature CA domain pentamer from HIV-1 CA-SP1 Gag proteolytic cleavage mutant virus particles
Method: EM (subtomogram averaging) / Resolution: 24.0 Å

EMDB-13079:
Representative cryo-electron tomogram of HIV-1 MA-SP1 particles
Method: EM (tomography)

EMDB-13080:
Representative cryo-electron tomogram of HIV-1 MA-CA particles
Method: EM (tomography)

Source
  • Homo sapiens (human)

+
About EMN Papers

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Papers

Database of articles cited by 3DEM data entries

  • Database of articles cited by 3DEM data entries in EMDB and PDB
  • Using PubMed data

Related info.:EMDB / PDB / Q: What are the data sources of EM Navigator? / EM Navigator / Yorodumi Papers / Changes in new EM Navigator and Yorodumi

Read more