[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,712 items for (keywords: nanodisc)

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-52784:
Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb11
Method: single particle / : Rasmussen T, Kuhn BT, Bottcher B, Geertsma ER

EMDB-52785:
Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb4
Method: single particle / : Rasmussen T, Kuhn BT, Bottcher B, Geertsma ER

PDB-9iar:
Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb11
Method: single particle / : Rasmussen T, Kuhn BT, Bottcher B, Geertsma ER

PDB-9ias:
Sulfate transporter SLC26A11 in nanodiscs with nanobody Nb4
Method: single particle / : Rasmussen T, Kuhn BT, Bottcher B, Geertsma ER

EMDB-55036:
Human TRPM4 ion channel in MSP2N2 lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, de Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

PDB-9smk:
Human TRPM4 ion channel in MSP2N2 lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, de Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

EMDB-54221:
NetF 9mer pre-pore map on 2N2 nanodiscs.
Method: single particle / : Iacovache I, Wang C, Zuber B

PDB-9rsm:
NetF 9mer pre-pore structure on 2N2 nanodiscs.
Method: single particle / : Iacovache I, Wang C, Zuber B

EMDB-73885:
Stable open state sheep connexin-46/50 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

EMDB-73896:
Destabilized open state sheep connexin-46 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

EMDB-73900:
Gated state sheep connexin-46/50 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

EMDB-73942:
Stable open state sheep connexin-46/50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

EMDB-73957:
Destabilized open state sheep connexin-46/50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

EMDB-73962:
Gated state sheep connexin-46/50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

EMDB-73965:
Asymmetrically gated state sheep connexin-46/50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z81:
Stable open state sheep connexin-46 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z82:
Stable open state sheep connexin-50 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z8f:
Destabilized open state sheep connexin-46 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z8l:
Destabilized open state sheep connexin-50 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z8m:
Gated state sheep connexin-46 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z9b:
Gated state sheep connexin-50 in DMPC nanodiscs at neutral pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z9g:
Stable open state sheep connexin-46 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z9h:
Stable open state sheep connexin-50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z9s:
Destabilized open state sheep connexin-46 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z9w:
Destabilized open state sheep connexin-50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z9x:
Gated state sheep connexin-46 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9z9y:
Gated state sheep connexin-50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9za3:
Asymmetrically gated state sheep connexin-46 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

PDB-9za4:
Asymmetrically gated state sheep connexin-50 in DMPC nanodiscs at low pH
Method: single particle / : Jarodsky JM, Myers JB, Reichow SL

EMDB-65153:
Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with PO4 in nanodiscs
Method: single particle / : Yang M, Qian HW

PDB-9vl3:
Cryo-EM structure of human lipid phosphate phosphatase 1 complexed with PO4 in nanodiscs
Method: single particle / : Yang M, Qian HW

EMDB-52611:
Human TRPM4 ion channel in MAASTY copolymer lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, De Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

PDB-9i3r:
Human TRPM4 ion channel in MAASTY copolymer lipid nanodisc in a calcium-bound state
Method: single particle / : Pugh CF, Feilen LP, Zivkovic D, Praestegaard KF, Sideris C, Borthwick NJ, De Lichtenberg C, Bolla JR, Autzen AAA, Autzen HE

EMDB-71088:
MscS in Glyco-DIBMA Native Nanodiscs (C7 symmetry)
Method: single particle / : Moller E, Britt M, Zhou F, Yang H, Anishkin A, Ernst R, Juan VM, Sukharev S, Matthies D

PDB-9p0n:
MscS in Glyco-DIBMA Native Nanodiscs (C7 symmetry)
Method: single particle / : Moller E, Britt M, Zhou F, Yang H, Anishkin A, Ernst R, Juan VM, Sukharev S, Matthies D

EMDB-48632:
Mus musculus TASK-1 (KCNK3) in MSP1E3D1 lipid nanodisc at pH 6.0 and 100 mM KCl
Method: single particle / : Docter TA, Brohawn SG

PDB-9muh:
Mus musculus TASK-1 (KCNK3) in MSP1E3D1 lipid nanodisc at pH 6.0 and 100 mM KCl
Method: single particle / : Docter TA, Brohawn SG

EMDB-60775:
Consensus map of Cx36/GJD2 gap junction intercellular channel in soybean polar lipid nanodiscs, treated with a 20-fold molar excess of carbenoxolone (including D6 and D1 symmetry maps)
Method: single particle / : Jang HS

EMDB-45777:
Structure of the full-length Measles virus Fusion protein E170G E455G in the pre-fusion conformation in nanodisc
Method: single particle / : Zyla D, Saphire EO

EMDB-45778:
Structure of the full-length Measles virus Fusion protein E170G E455G in the pre-fusion conformation bound by [FIP-HRC]2-PEG11 in nanodisc
Method: single particle / : Zyla D, Saphire EO

PDB-9coe:
Structure of the full-length Measles virus Fusion protein E170G E455G in the pre-fusion conformation in nanodisc
Method: single particle / : Zyla D, Saphire EO

PDB-9cof:
Structure of the full-length Measles virus Fusion protein E170G E455G in the pre-fusion conformation bound by [FIP-HRC]2-PEG11 in nanodisc
Method: single particle / : Zyla D, Saphire EO

EMDB-60713:
Hemichannel sub-structure of Cx43/GJA1 gap junction intercellular channel, treated with a 5-molar excess of carbenoxolone
Method: single particle / : Lee CW

EMDB-60717:
Consensus map of Cx43/GJA1 gap junction intercellular channel in POPE nanodiscs, treated with a 5-fold molar excess of carbenoxolone (including D6 and D1 symmetry maps)
Method: single particle / : Lee CW

EMDB-60741:
Consensus map of Cx43/GJA1 gap junction intercellular channel in POPE nanodiscs, treated with a 20-fold molar excess of carbenoxolone (including D6 and D1 symmetry maps)
Method: single particle / : Lee CW

EMDB-60743:
Hemichannel sub-structure of Cx43/GJA1 gap junction intercellular channel in POPE nanodiscs, treated with a 20-fold molar excess of carbenoxolone
Method: single particle / : Lee CW

EMDB-60753:
Consensus map of Cx36/GJD2 gap junction intercellular channel in brain polar lipid nanodiscs (including D6 and D1 symmetry maps)
Method: single particle / : Jang HS

EMDB-60754:
Hemichannel sub-structure of Cx36/GJD2 gap junction intercellular channel (FN conformation) in brain polar lipid nanodiscs
Method: single particle / : Jang HS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more