[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,832 items for (author: yang & p)

EMDB-66405:
PmCas12m-crRNA-target DNA complex
Method: single particle / : Meng J, Tao Y

PDB-9wzr:
PmCas12m-crRNA-target DNA complex
Method: single particle / : Meng J, Tao Y

EMDB-68583:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

PDB-22pd:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

EMDB-66823:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

EMDB-66824:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

PDB-9xfi:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

PDB-9xfj:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

EMDB-72497:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (composite map from PHENIX based on consensus and local refinement maps from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

PDB-9y4t:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (composite map from PHENIX based on consensus and local refinement maps from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72626:
Cryo-EM structure of PI(3,5)P2-bound full-length mouse TRPML2 channel in lipid nanodisc II
Method: single particle / : Park S, Yang J

EMDB-72637:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed I
Method: single particle / : Park S, Yang J

EMDB-72638:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed II
Method: single particle / : Park S, Yang J

EMDB-72642:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed III
Method: single particle / : Park S, Yang J

EMDB-72643:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed IV
Method: single particle / : Park S, Yang J

EMDB-72662:
Cryo-EM structure of PI(3,5)P2 and ML-SA1 bound full-length mouse TRPML2 channel in lipid nanodisc, closed I
Method: single particle / : Park S, Yang J

PDB-9y6p:
Cryo-EM structure of PI(3,5)P2-bound full-length mouse TRPML2 channel in lipid nanodisc II
Method: single particle / : Park S, Yang J

PDB-9y70:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed I
Method: single particle / : Park S, Yang J

PDB-9y71:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed II
Method: single particle / : Park S, Yang J

PDB-9y73:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed III
Method: single particle / : Park S, Yang J

PDB-9y75:
Cryo-EM structure of ML-SA1-bound full-length mouse TRPML2 channel in lipid nanodisc, closed IV
Method: single particle / : Park S, Yang J

PDB-9y7o:
Cryo-EM structure of PI(3,5)P2 and ML-SA1 bound full-length mouse TRPML2 channel in lipid nanodisc, closed I
Method: single particle / : Park S, Yang J

EMDB-77750:
1D6 Fab/NA25:Ab complex
Method: single particle / : Du J, Pallesen J

EMDB-66860:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with CS-42 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

EMDB-66861:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with SR-23 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

PDB-9xgw:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with CS-42 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

PDB-9xgx:
Cryo-EM structure of SARS-CoV-2 receptor binding domain in complex with SR-23 Fab (local refinement of RBD and Fv)
Method: single particle / : Kim UJ, Wang DM, Yoon GY, Cho HS

EMDB-72356:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened AHD1 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72403:
Alternative NBD1-binding geometry in channel-formed, ATP-bound, VX809-bound, T2a-nanobody-bound wild-type human CFTR (Composite map from PHENIX)
Method: single particle / : Hunt JF, Paige AS, Govaerts C, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Overtus M, Rich Z

EMDB-72491:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened WalkerB2 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72492:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened AHD2 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72493:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened CORE2 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72494:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened WalkerB1 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z, Baranwal J

EMDB-72495:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR (sharpened CORE1 local refinement map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72496:
V-shaped (channel-formed), ATP-bound, VX809-bound conformation of wild-type human CFTR ( Consensus map from cryoSPARC)
Method: single particle / : Hunt JF, Paige AS, Baranwal J, Cohen BM, Goldberg PM, Wang C, Loughlin BJ, Kappes JC, Yang Z, Jiang F, Govaerts C, Overtus M, Rich Z

EMDB-72509:
Cryo-EM structure of apo full-length mouse TRPML2 channel in lipid nanodisc, closed II
Method: single particle / : Park S, Yang J

EMDB-72510:
Cryo-EM structure of apo full-length mouse TRPML2 channel in lipid nanodisc, closed III
Method: single particle / : Park S, Yang J

PDB-9y5i:
Cryo-EM structure of apo full-length mouse TRPML2 channel in lipid nanodisc, closed II
Method: single particle / : Park S, Yang J

PDB-9y5j:
Cryo-EM structure of apo full-length mouse TRPML2 channel in lipid nanodisc, closed III
Method: single particle / : Park S, Yang J

EMDB-65399:
Cryo-EM structure of zika virus complexed with Fab 1C11
Method: single particle / : Dai LP, Lu YM, Yang CX

PDB-9vwm:
Cryo-EM structure of zika virus complexed with Fab 1C11
Method: single particle / : Dai LP, Lu YM, Yang CX

EMDB-69003:
Complex of FMDV O/HN/CHA/93 and porcine-derived neutralizing monoclonal antibody pO18-29
Method: single particle / : Wu S, Lei D

EMDB-69004:
Complex of FMDV O/18074 and porcine-derived neutralizing monoclonal antibody pO18-29
Method: single particle / : Wu S, Lei D

EMDB-80320:
CyroEM structure of the complex between Shiga toxin Stx1a B subunit and neutralising Fab fragment of RDS045
Method: single particle / : Chen SD, Li X

PDB-25rg:
CyroEM structure of the complex between Shiga toxin Stx1a B subunit and neutralising Fab fragment of RDS045
Method: single particle / : Chen SD, Li X

EMDB-73559:
Chimeric (human-yeast) Sec complex bound to coibamide A
Method: single particle / : Park E, Wang L

EMDB-80337:
CyroEM structure of the complex between Shiga toxin Stx1a B subunit and neutralising Fab fragment of RDS059
Method: single particle / : Chen SD, Li X

PDB-25sb:
CyroEM structure of the complex between Shiga toxin Stx1a B subunit and neutralising Fab fragment of RDS059
Method: single particle / : Chen SD, Li X

EMDB-82114:
Alpha-7 nicotinic acetylcholine receptor bound to inhibitory bicyclic peptide KP1877 in a resting state
Method: single particle / : Chen H, Sun D, Tian C

PDB-43sn:
Alpha-7 nicotinic acetylcholine receptor bound to inhibitory bicyclic peptide KP1877 in a resting state
Method: single particle / : Chen H, Sun D, Tian C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more