[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 352 items for (author: white & ki)

EMDB-70529:
sx20S complex (NSF-alphaSNAP-syntaxin-1a), non-hydrolyzing, class 1
Method: single particle / : White KI, Brunger AT

EMDB-70536:
sx20S complex (NSF-alphaSNAP-syntaxin-1a), 4:4 alphaSNAP-syntaxin-1a subcomplex local refinement, non-hydrolyzing, class 1
Method: single particle / : White KI, Brunger AT

EMDB-72724:
The structure of the cardiac native crossbridge in the rigor state, myosin heads bound to actin molecules 6 and 7
Method: single particle / : Galkin VE, Risi CM

EMDB-72734:
The structure of the cardiac native cross bridge in the rigor state, myosin heads bound to actin molecules 5 and 6.
Method: single particle / : Galkin VE, Risi CM

EMDB-73030:
The structure of the cardiac native crossbridge in the rigor state, myosin heads bound to actin molecules 2 and 3
Method: single particle / : Galkin VE, Risi CM

EMDB-73042:
The structure of the cardiac native crossbridge in the rigor state, myosin heads bound to actin molecules 1 and 2
Method: single particle / : Galkin VE, Risi CM

EMDB-73055:
The structure of the cardiac native crossbridge in the rigor state, myosin heads with essential and regulatory light chains bound to actin molecules 6 and 7
Method: single particle / : Galkin VE, Risi CM

PDB-9ya8:
The structure of the cardiac native crossbridge in the rigor state, myosin heads bound to actin molecules 6 and 7
Method: single particle / : Galkin VE, Risi CM

PDB-9yaq:
The structure of the cardiac native cross bridge in the rigor state, myosin heads bound to actin molecules 5 and 6.
Method: single particle / : Galkin VE, Risi CM

PDB-9yjp:
The structure of the cardiac native crossbridge in the rigor state, myosin heads bound to actin molecules 2 and 3
Method: single particle / : Galkin VE, Risi CM

PDB-9yk9:
The structure of the cardiac native crossbridge in the rigor state, myosin heads bound to actin molecules 1 and 2
Method: single particle / : Galkin VE, Risi CM

PDB-9ykn:
The structure of the cardiac native crossbridge in the rigor state, myosin heads with essential and regulatory light chains bound to actin molecules 6 and 7
Method: single particle / : Galkin VE, Risi CM

EMDB-71602:
Cryo-EM structure of VX77 Fab in complex with GII.4 Norovirus P domain
Method: single particle / : Jo G, Ward AB

EMDB-71603:
Cryo-EM structure of VX93 Fab in complex with GII.4 Norovirus P domain
Method: single particle / : Jo G, Ward AB

EMDB-72540:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX77 Fab
Method: single particle / : Jo G, Ward AB

EMDB-72541:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab
Method: single particle / : Jo G, Ward AB

EMDB-72542:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - fivefold axis local map (4 Fabs)
Method: single particle / : Jo G, Ward AB

EMDB-72543:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - fivefold axis local map (5 Fabs-1)
Method: single particle / : Jo G, Ward AB

EMDB-72544:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - fivefold axis local map (5 Fabs-2)
Method: single particle / : Jo G, Ward AB

EMDB-72545:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - fivefold axis local map (3 Fabs-1)
Method: single particle / : Jo G, Ward AB

EMDB-72546:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - fivefold axis local map (3 Fabs-2)
Method: single particle / : Jo G, Ward AB

EMDB-72547:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - threefold axis local map (1 Fab)
Method: single particle / : Jo G, Ward AB

EMDB-72548:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - threefold axis local map (2 Fabs-1)
Method: single particle / : Jo G, Ward AB

EMDB-72549:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - threefold axis local map (2 Fabs-2)
Method: single particle / : Jo G, Ward AB

EMDB-72550:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - threefold axis local map (2 Fabs-3)
Method: single particle / : Jo G, Ward AB

EMDB-72551:
Cryo-EM map of norovirus GII.4 SY 2012 VLP in complex with VX93 Fab - threefold axis local map (3 Fabs)
Method: single particle / : Jo G, Ward AB

PDB-9pfj:
Cryo-EM structure of VX77 Fab in complex with GII.4 Norovirus P domain
Method: single particle / : Jo G, Ward AB

PDB-9pfk:
Cryo-EM structure of VX93 Fab in complex with GII.4 Norovirus P domain
Method: single particle / : Jo G, Ward AB

EMDB-67283:
C1 Symmetry of DNA tesseract
Method: single particle / : Shiu SCC

EMDB-67284:
Octahedral Symmetry of DNA Tesseract
Method: single particle / : Shiu SCC

EMDB-72086:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

PDB-9q03:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BCL6-760 (LDD, local refined)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-71591:
NSF, substrate free, hydrolyzing, class 25
Method: single particle / : White KI, Brunger AT

EMDB-71598:
NSF, substrate free, hydrolyzing, class 26
Method: single particle / : White KI, Brunger AT

EMDB-45885:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 3
Method: single particle / : Khan YA, Brunger AT

EMDB-48826:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49380:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 4
Method: single particle / : Khan YA, Brunger AT

EMDB-49522:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 5
Method: single particle / : Khan YA, Brunger AT

EMDB-49524:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 6
Method: single particle / : Khan YA, Brunger AT

EMDB-49526:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 7
Method: single particle / : Khan YA, Brunger AT

EMDB-49527:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - Class 8
Method: single particle / : Khan YA, Brunger AT

EMDB-49528:
Y20S (Sec18-Sec17-Sec9-Sso1-Snc1) EDTA - All Merge (Class 9, focused on D1/D2)
Method: single particle / : Khan YA, Brunger AT

EMDB-49801:
Y20S after Mg2+ (Sec18) - Class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49802:
Y20S after Mg2+ (Sec18) - Class 3
Method: single particle / : Khan YA, Brunger AT

EMDB-49824:
Y20S after Mg2+ (Sec18) - Class 4
Method: single particle / : Khan YA, Brunger AT

EMDB-49825:
Sec18 Mg2+ class 2
Method: single particle / : Khan YA, Brunger AT

EMDB-49826:
Sec18 Mg2+ class 1
Method: single particle / : Khan YA, Brunger AT

EMDB-49831:
NSF Mg2+ class 1 heptamer
Method: single particle / : Khan YA, Brunger AT

EMDB-49833:
NSF Mg2+ class 2 hexamer
Method: single particle / : Khan YA, Brunger AT

EMDB-70472:
Y20S hydrolyzing Class 1
Method: single particle / : Khan YA, Brunger AT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more