[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 49 items for (author: qingyu & t)

EMDB-45938:
BmrCD in inward-facing conformation bound to Hoechsts
Method: single particle / : Tang Q, Mchaourab HS

EMDB-45939:
BmrCD in the inward-facing conformation bound to Hoechsts and lipids
Method: single particle / : Tang Q, Mchaourab HS

EMDB-45940:
BmrCD in the outward-facing conformation bound to Hoechsts
Method: single particle / : Tang Q, Mchaourab HS

PDB-9cup:
BmrCD in inward-facing conformation bound to Hoechsts
Method: single particle / : Tang Q, Mchaourab HS

PDB-9cur:
BmrCD in the inward-facing conformation bound to Hoechsts and lipids
Method: single particle / : Tang Q, Mchaourab HS

PDB-9cus:
BmrCD in the outward-facing conformation bound to Hoechsts
Method: single particle / : Tang Q, Mchaourab HS

EMDB-62292:
cryo-EM structure of TRIP12 in complex with K29/48 branched-triUb
Method: single particle / : Ai HS, Wu XW, Liu L

PDB-9ken:
cryo-EM structure of TRIP12 in complex with K29/48 branched-triUb
Method: single particle / : Ai HS, Wu XW, Liu L

EMDB-38198:
hCDCA7 bound to nucleosome with hemimethylated CpG in 3'-linker DNA
Method: single particle / : Hiruta M, Shikimachi R, Kikuchi A, Nishiyama A, Funabiki H, Arita K

EMDB-38199:
hCDCA7 in complexed with linker DNA including hemimethylated CpG
Method: single particle / : Hiruta M, Shikimachi R, Kikuchi A, Nishiyama A, Funabiki H, Arita K

EMDB-39800:
cryo-EM map of RNF168(1-193) in complex with Ubc5c-Ub conjugated nucleosome at a resolution of 3.23 angstrom
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Tian CL, Liu L, Pan M

EMDB-60066:
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes (two Ub conformation)
Method: single particle / : Ai HS, Tong ZB, Deng ZH, Tian CL, Liu L, Pan M

EMDB-39594:
Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Method: single particle / : Kikuchi A, Shikimachi R, Nishiyama A, Funabiki H, Arita K

PDB-8yv8:
Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Method: single particle / : Kikuchi A, Shikimachi R, Nishiyama A, Funabiki H, Arita K

EMDB-35929:
Cryo-EM structure of Ufd4 in complex with K29/48 triUb
Method: single particle / : Ai HS, Mao JX, Wu XW, Pan M, Liu L

EMDB-35931:
cryo-EM structures of Ufd4 in complex with Ubc4-Ub
Method: single particle / : Ai HS, Mao JX, Wu XW, Cai HY, Pan M, Liu L

PDB-8j1p:
Cryo-EM structure of Ufd4 in complex with K29/48 triUb
Method: single particle / : Ai HS, Mao JX, Wu XW, Pan M, Liu L

PDB-8j1r:
cryo-EM structures of Ufd4 in complex with Ubc4-Ub
Method: single particle / : Ai HS, Mao JX, Wu XW, Cai HY, Pan M, Liu L

EMDB-41004:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP2
Method: single particle / : Tang Q, Mchaourab H

PDB-8t3k:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP2
Method: single particle / : Tang Q, Mchaourab H

EMDB-29362:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP
Method: single particle / : Tang Q, Mchaourab H

PDB-8fpf:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to ATP: BmrCD_IF-ATP
Method: single particle / : Tang Q, Mchaourab H

EMDB-29087:
Heterodimeric ABC transporter BmrCD in the occluded conformation bound to ATP: BmrCD_OC-ATP
Method: single particle / : Tang Q, Mchaourab H

EMDB-29297:
Structure0915
Method: single particle / : Qingyu T, Mchaourab H

EMDB-40908:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to substrate and ATP: BmrCD_IF-1HT/ATP
Method: single particle / : Tang Q, Mchaourab H

EMDB-40974:
BmrCD_OC-ADPVi
Method: single particle / : Tang Q, Hassane M

EMDB-41058:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to substrate and ADPVi: BmrCD_IF-HT/ADPVi
Method: single particle / : Qingyu T, Hassane M

PDB-8fhk:
Heterodimeric ABC transporter BmrCD in the occluded conformation bound to ATP: BmrCD_OC-ATP
Method: single particle / : Tang Q, Mchaourab H

PDB-8fmv:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to substrate and ATP: BmrCD_IF-2HT/ATP
Method: single particle / : Tang Q, Mchaourab H

PDB-8szc:
Heterodimeric ABC transporter BmrCD in the inward-facing conformation bound to substrate and ATP: BmrCD_IF-1HT/ATP
Method: single particle / : Tang Q, Mchaourab H

PDB-8t1p:
Heterodimeric ABC transporter BmrCD in the occluded conformation bound to ADPVi: BmrCD_OC-ADPVi
Method: single particle / : Tang Q, Mchaourab HS

EMDB-34028:
cryo-EM structure of gammaH2AXK15ub-H4K20me2 nucleosome bound to 53BP1
Method: single particle / : Ai HS, GuoChao C, Qingyue G, Ze-Bin T, Zhiheng D, Xin L, Fan Y, Ziyu X, Jia-Bin L, Changlin T, Liu L

PDB-7yqk:
cryo-EM structure of gammaH2AXK15ub-H4K20me2 nucleosome bound to 53BP1
Method: single particle / : Ai HS, GuoChao C, Qingyue G, Ze-Bin T, Zhiheng D, Xin L, Fan Y, Ziyu X, Jia-Bin L, Changlin T, Liu L

EMDB-23641:
The structure of Bacillus subtilis BmrCD in the inward-facing conformation bound to Hoechst-33342 and ATP
Method: single particle / : Thaker TM, Tomasiak TM

PDB-7m33:
The structure of Bacillus subtilis BmrCD in the inward-facing conformation bound to Hoechst-33342 and ATP
Method: single particle / : Thaker TM, Tomasiak TM

EMDB-23806:
Structure of yeast Ubr1 in complex with Ubc2 and N-degron
Method: single particle / : Pan M, Zheng Q

EMDB-23807:
Structure of yeast Ubr1 in complex with Ubc2 and monoubiquitinated N-degron
Method: single particle / : Pan M, Zheng Q

EMDB-24935:
CryoEM map of yeast Ubr1 in complex with monoubiquitinated N-degron
Method: single particle / : Pan M, Zheng Q, Zhao M

EMDB-24936:
CryoEM map of yeast Ubr1
Method: single particle / : Pan M, Zheng Q, Zhao M

PDB-7mex:
Structure of yeast Ubr1 in complex with Ubc2 and N-degron
Method: single particle / : Pan M, Zheng Q, Wang T, Liang L, Yu Y, Liu L, Zhao M

PDB-7mey:
Structure of yeast Ubr1 in complex with Ubc2 and monoubiquitinated N-degron
Method: single particle / : Pan M, Zheng Q, Wang T, Liang L, Yu Y, Liu L, Zhao M

EMDB-30482:
SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state
Method: single particle / : Wang X, Wang N

PDB-7cwl:
SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state
Method: single particle / : Wang X, Wang N

EMDB-30483:
Complex of SARS-CoV-2 spike protein and Fab P17 with one RBD in open state and two RBD in closed state
Method: single particle / : Wang N, Wang X

EMDB-30484:
P17-H014 Fab cocktail in complex with SARS-CoV-2 spike protein
Method: single particle / : Wang N, Wang X

EMDB-30485:
SARS-CoV-2 spike protein RBD and P17 fab complex
Method: single particle / : Wang X, Wang N

PDB-7cwm:
Complex of SARS-CoV-2 spike protein and Fab P17 with one RBD in open state and two RBD in closed state
Method: single particle / : Wang N, Wang X

PDB-7cwn:
P17-H014 Fab cocktail in complex with SARS-CoV-2 spike protein
Method: single particle / : Wang N, Wang X

PDB-7cwo:
SARS-CoV-2 spike protein RBD and P17 fab complex
Method: single particle / : Wang X, Wang N

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more