[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 84 items for (author: passos & d)

EMDB-44962:
Tetrameric Complex of full-length HIV-1 integrase protein bound to the integrase binding domain of LEDGF/p75
Method: single particle / : Jing T, Shan Z, Lyumkis D, Biswas A

EMDB-45103:
Consensus map of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45104:
Top half of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45150:
Bottom half of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-45151:
Hexadecamer of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z, Biswas A

PDB-9bw9:
Tetrameric Complex of full-length HIV-1 integrase protein bound to the integrase binding domain of LEDGF/p75
Method: single particle / : Jing T, Shan Z, Lyumkis D, Biswas A

PDB-9c29:
Hexadecamer of NL4-3 WT HIV-1 intasome
Method: single particle / : Lyumkis D, Jing T, Zhang Z

EMDB-70530:
Tetrameric full-length HIV-1 integrase protein complex
Method: single particle / : Jing T, Lyumkis D, Shan Z

EMDB-36766:
Untilted (0 Degree Tilted) Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36767:
10 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36768:
20 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36769:
30 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36770:
40 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36771:
50 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36772:
60 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36807:
Untilted (0 Degree Tilted) Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36809:
10 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36810:
20 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36811:
30 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36812:
40 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36813:
60 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36814:
50 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36816:
Untilted (0 Degree Tilted) Single-Particle CryoEM Reconstruction of DPS
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36817:
10 Degree Tilted Single-Particle CryoEM Reconstruction of DPS
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36818:
20 Degree Tilted Single-Particle CryoEM Reconstruction of DPS
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36819:
30 Degree Tilted Single-Particle CryoEM Reconstruction of DPS
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36820:
40 Degree Tilted Single-Particle CryoEM Reconstruction of DPS
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36821:
50 Degree Tilted Single-Particle CryoEM Reconstruction of DPS
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36822:
60 Degree Tilted Single-Particle CryoEM Reconstruction of DPS
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-41230:
Untilted (0 Degree Tilted) Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-41231:
30 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-41695:
60 Degree Tilted Single-Particle CryoEM Reconstruction of RNA polymerase
Method: single particle / : Aiyer S, Shan Z, Oh J, Wang D, Tan YZ, Lyumkis D

PDB-8txo:
E. coli DNA-directed RNA polymerase transcription elongation complex bound to the unnatural dZ-PTP base pair in the active site
Method: single particle / : Aiyer S, Shan Z, Oh J, Wang D, Tan YZ, Lyumkis D

EMDB-29307:
Structure of WT HIV-1 intasome bound to Dolutegravir
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29309:
Structure of E138K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29312:
Structure of G140A HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29313:
Structure of Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29315:
Structure of E138K/G140A HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29317:
Structure of E138K/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29318:
Structure of G140A/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29319:
Structure of E138K/G140A/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29320:
Structure of E138K/G140A/Q148R HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29321:
Structure of E138K/G140S/Q148H HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29322:
Structure of E138K/G140A/Q148K HIV-1 intasome with 4d bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fn7:
Structure of WT HIV-1 intasome bound to Dolutegravir
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnd:
Structure of E138K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fng:
Structure of G140A HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnh:
Structure of Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnj:
Structure of E138K/G140A HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnl:
Structure of E138K/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more