3DEM data search - EMN search

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Processing method	electron tomography subtomogram averaging single particle reconstruction helical reconstruction electron crystallography

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Entry	Title Data Release Date Last Update Submission Date Authors Processing Site EMPIAR-ID
Article	Journal Name PubMed ID Country
Sample	Component Species Aggregation State Molecular Weight (MDa)
Experiment	Cryogen Name Instrument for Vitrification Specimen Holder Specimen Temperature Microscope Accelerating Voltage Electron Source Detector
Processing	Method Resolution Resolution Method CTF correction 3D reconstruction Algorithm Software fo 3D reconstruction Model PDB ID Software for modeling

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Showing all 23 items for (author: modhiran & n)

EMDB-44380:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody

PDB-9b9e:
Prefusion F glycoprotein ectodomain of Nipah virus ectodomain in complex with DS90 nanobody

EMDB-29299:
Langya virus F glycoprotein ectodomain in prefusion form

EMDB-29300:
Mojiang virus F ectodomain in prefusion form

PDB-8fmx:
Langya virus F glycoprotein ectodomain in prefusion form

PDB-8fmy:
Mojiang virus F ectodomain in prefusion form

EMDB-16030:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)

PDB-8bgg:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD)

EMDB-16028:
Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 4, one RBD up)

EMDB-23330:
Binjari virus (BinJV) complexed with pr-specific Fab 2A7

EMDB-23147:
The structure of an infectious immature flavivirus redefines viral architecture and maturation

PDB-7l30:
Binjari virus (BinJV)

EMDB-23042:
Chimeric flavivirus between Binjari virus and Dengue virus serotype-2

EMDB-23043:
Chimeric flavivirus between Binjari virus and West Nile (Kunjin) virus

EMDB-23044:
Structure of West Nile virus (Kunjin)

EMDB-23045:
Chimeric flavivirus between Binjari virus and Murray Valley encephalitis virus

PDB-7kv8:
Chimeric flavivirus between Binjari virus and Dengue virus serotype-2

PDB-7kv9:
Chimeric flavivirus between Binjari virus and West Nile (Kunjin) virus

PDB-7kva:
Structure of West Nile virus (Kunjin)

PDB-7kvb:
Chimeric flavivirus between Binjari virus and Murray Valley encephalitis virus

EMDB-20417:
Cryo-EM reconstruction of the mature chimeric BinJV/ZIKV-prME virion

EMDB-20438:
Cryo-EM reconstruction of the mature chimeric BinJV/ZIKV-prME virion in complex with Fab C8

EMDB-20439:
Cryo-EM reconstruction of the immature chimeric BinJV/ZIKV-prME virion

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News

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

Version 3 of the EMDB header file is now the official format.
The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Aug 12, 2020. Covid-19 info

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Mar 5, 2020. Novel coronavirus structure data

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Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

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Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

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