[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 720 items for (author: martinez & m)

EMDB-54884:
Native Neisseria meninigitidis PilQ, Gate Domain focused map
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-54885:
Native Neisseria meningitidis PilQ, N0-domain focused map
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-54886:
Neisseria meningitidis Native PilQ protomer, composite map
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-54887:
Neisseria meningitidis Native PilQ tetradecamer
Method: single particle / : Fernandez-Martinez D, Dumenil G

PDB-9sh1:
Neisseria meningitidis Native PilQ protomer, composite map
Method: single particle / : Fernandez-Martinez D, Dumenil G

PDB-9sh2:
Neisseria meningitidis Native PilQ tetradecamer
Method: single particle / : Fernandez-Martinez D, Dumenil G

EMDB-75696:
1332D4-RBD KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75698:
1332D4 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75725:
1332E5 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

EMDB-75726:
1332E5-RBD KP3.1.1 Complex Local Refine
Method: single particle / : Kizziah JL, Walter MR

PDB-11hm:
1332D4-RBD KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11ho:
1332D4 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11is:
1332E5 Spike KP3.1.1 Complex
Method: single particle / : Kizziah JL, Walter MR

PDB-11it:
1332E5-RBD KP3.1.1 Complex Local Refine
Method: single particle / : Kizziah JL, Walter MR

EMDB-76716:
In situ cryo-EM structure of axonal microtubules from ghost neurons (compact lattice)
Method: helical / : Bodakuntla S, Marelli J, Vasquez-Montes V, Biertumpfel C, Mizuno N, Basnet N, Zhang R, Martinez-Sanchez A

EMDB-55728:
Structure of bacteriophage NO16
Method: single particle / : Otaegi-Ugartemendia S, Condezo GN, Martinez M, Kalatzis PG, Middelboe M, San Martin C

EMDB-55739:
Structure of bacteriophage NO16
Method: single particle / : Otaegi-Ugartemendia S, Condezo GN, Martinez M, Kalatzis PG, Middelboe M, San Martin C

PDB-9t9r:
Structure of bacteriophage NO16
Method: single particle / : Otaegi-Ugartemendia S, Condezo GN, Martinez M, Kalatzis PG, Middelboe M, San Martin C

PDB-9t9v:
Structure of bacteriophage NO16
Method: single particle / : Otaegi-Ugartemendia S, Condezo GN, Martinez M, Kalatzis PG, Middelboe M, San Martin C

EMDB-55120:
Focus refined 60S map of WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55121:
Focus refined 40S map of WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55126:
WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55215:
WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55216:
Focus refined 60S map of WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55217:
Focus refined 40S map of WT-HEK 80S ribosome bound to TISU mRNA (WT-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55218:
Focus refined 40S map of RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55219:
RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55220:
Focus refined 60S map of RPS26dC HEK mutant 80S ribosome bound to Kozak mRNA (RPS26dC-Kozak)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55226:
Focus refined 40S map of RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55227:
Focus refined 60S map of RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55228:
RPS26dC HEK mutant 80S ribosome bound to TISU mRNA (RPS26dC-TISU) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55300:
WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B) consensus map
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55301:
Focus refined 60S map of WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-55302:
Focus refined 40S map of WT-HEK 80S ribosome bound to H2B mRNA (WT-H2B)
Method: single particle / : Hiregange DG, Fraticelli D, Bashan A, Yonath A, Dikstein R

EMDB-54904:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54905:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-54925:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

EMDB-55037:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55097:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

EMDB-55099:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

EMDB-55105:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

EMDB-55115:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9shm:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9shn:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9si8:
Structure of trans-basal conformer of human CBS trapped in PLP-aminoacrylate intermediate state (CBS PLP-AA)- by Helical processing.
Method: helical / : Inayathulla M, Tomas M

PDB-9sml:
Structure of trans-basal conformer of human CBS trapped in PLP-serine external aldemine intermediate (CBS-PLP-Ser)- by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spv:
focused structure of regulatory domains of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by Helical approach
Method: helical / : Inayathulla M, Tomas M

PDB-9spw:
Structure of cis-basal conformer of human CBS induced by non-activating allosteric SAO ligand - by single particle approach.
Method: single particle / : Inayathulla M, Tomas M

PDB-9sq0:
Structure of trans-basal conformer of wild-type human CBS alone (internal aldemine)- by single particle approach
Method: single particle / : Inayathulla M, Tomas M

PDB-9sqq:
Structure of trans-basal conformer of wild-type human CBS enzyme in absence of substrate and allosteric activators- by Helical approach
Method: helical / : Inayathulla M, Tomas M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more