[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 9,051 items for (author: jin & s)

EMDB-56582:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S body)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-56583:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S head)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-64755:
Nav1.5 in complex with quinidine-azo
Method: single particle / : Huang Z, Li Z, Liu S

PDB-9v3s:
Nav1.5 in complex with quinidine-azo
Method: single particle / : Huang Z, Li Z, Liu S

EMDB-64823:
PSI-LHCE supercomplex from Euglena gracilis
Method: single particle / : Bai TY, Mao ZY, Tian LR

EMDB-64824:
PSI-LHCE supercomplex from Euglena gracilis.
Method: single particle / : Bai TY, Mao ZY, Tian LR

PDB-9v7t:
PSI-LHCE supercomplex from Euglena gracilis.
Method: single particle / : Bai TY, Mao ZY, Tian LR

PDB-9v7u:
PSI-LHCE supercomplex from Euglena gracilis.
Method: single particle / : Bai TY, Mao ZY, Tian LR

EMDB-71512:
NER dual incision complex - NoG
Method: single particle / : Kim J, Li CL, Yang W

PDB-9pcp:
NER dual incision complex - NoG
Method: single particle / : Kim J, Li CL, Yang W

EMDB-63691:
At S3 trimer
Method: single particle / : Zhang SS

EMDB-63692:
At S1+2S3 trimer
Method: single particle / : Zhang SS

EMDB-63695:
At 2S1+S3-tRNA trimer
Method: single particle / : Zhang SS

PDB-9m7r:
At S3 trimer
Method: single particle / : Zhang SS

PDB-9m7s:
At S1+2S3 trimer
Method: single particle / : Zhang SS

PDB-9m7w:
At 2S1+S3-tRNA trimer
Method: single particle / : Zhang SS

EMDB-64818:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) conformation a undergoing the first-step self-splicing
Method: single particle / : Hong Y, Liu J, Zhang X, Li S, Zhang K, Liu L

EMDB-64819:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) conformation b undergoing the first-step self-splicing
Method: single particle / : Hong Y, Liu J, Zhang X, Li S, Zhang K, Liu L

EMDB-64820:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) intron conformation after the self-splicing
Method: single particle / : Hong Y, Liu J, Zhang X, Li S, Zhang K, Liu L

EMDB-64821:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) intron conformation after the cyclization
Method: single particle / : Hong Y, Liu J, Zhang X, Li S, Zhang K, Liu L

EMDB-66618:
Cryo-EM structure of the Azoarcus sp. BH72 pre-tRNA(ILE) intron after second-step cyclization (circular form)
Method: single particle / : Hong Y, Liu JS, Zhang K, Li S, Hu R, Liu L

PDB-9v7n:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) conformation a undergoing the first-step self-splicing
Method: single particle / : Hong Y, Liu J, Zhang X, Liu J, Li S, Zhang K

PDB-9v7o:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) conformation b undergoing the first-step self-splicing
Method: single particle / : Hong Y, Liu J, Zhang X, Liu J, Li S, Zhang K

PDB-9v7p:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) intron conformation after the self-splicing
Method: single particle / : Hong Y, Liu J, Zhang X, Liu J, Li S, Zhang K

PDB-9v7q:
Cryo-EM structures of the Azoarcus pre-tRNA(ILE) intron conformation after the cyclization
Method: single particle / : Hong Y, Liu J, Zhang X, Liu J, Li S, Zhang K

PDB-9x6b:
Cryo-EM structure of the Azoarcus sp. BH72 pre-tRNA(ILE) intron after second-step cyclization (circular form)
Method: single particle / : Hong Y, Liu JS, Zhang K, Li S

EMDB-62051:
Cryo-EM structure of depolymerase S2-4 from Klebsiella phage K64-1
Method: single particle / : Zhao R, Du T, Ren Z, Gu J, Ru H

EMDB-62052:
Cryo-EM structure of depolymerase S2-4 from Klebsiella phage K64-1
Method: single particle / : Zhao R, Du T, Ren Z, Gu J, Ru H

PDB-9k4a:
Cryo-EM structure of depolymerase S2-4 from Klebsiella phage K64-1
Method: single particle / : Zhao R, Du T, Ren Z, Gu J, Ru H

PDB-9k4b:
Cryo-EM structure of depolymerase S2-4 from Klebsiella phage K64-1
Method: single particle / : Zhao R, Du T, Ren Z, Gu J, Ru H

PDB-9uje:
Cryo-EM structure of SARS-CoV2 KP.3.1.1 spike protein
Method: single particle / : He MZ

EMDB-67990:
Open-state structure of veratridine-activated human Nav1.7
Method: single particle / : Fan X, Huang J, Yan N

EMDB-73228:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73231:
Cryo-EM map of D614G spike, 1-up-RBD
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73244:
SARS-CoV-2 D614G spike, 3-RBD-downn
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73245:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73247:
Fab-14/SARS-CoV-2 D614G spike complex, Mode V conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73260:
Fab-14/SARS-CoV-2 D614G spike complex, Mode I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73263:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73265:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup II conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73267:
Fab-14/SARS-CoV-2 D614G spike complex, Mode II, subgroup III conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73270:
Fab-14/SARS-CoV-2 Omicron BA.1 spike complex
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73271:
SARS-CoV-2 Omicron BA.1 spike, 3-RBD-down
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73273:
SARS-CoV-2 Omicron BA.1 spike, 1-RBD-up
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73290:
Fab-14/SARS-CoV-2 D614G spike complex, Mode III conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73291:
Unbound SARS-CoV-2 D614G spike
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73292:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup II conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

EMDB-73306:
Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

PDB-9ynr:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode I
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

PDB-9ynx:
Local refinement of Fab-14/SARS-CoV-2 D614G spike complex, Mode IV, Subgroup I conformation
Method: single particle / : Wang Y, Hu Y, Leiman P, Xie X

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more