[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 19,650 items for (author: ji & d)

EMDB-73285:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-73287:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75391:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75392:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qq:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qr:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp6:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp8:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-65192:
Cryo-EM structure of the a-KG-OXGR1-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

EMDB-65193:
Cryo-EM structure of the ITA-OXGR1-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

EMDB-65194:
Cryo-EM structure of the A-1-OXGR1-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

EMDB-65222:
Cryo-EM structure of the OXGR1(CA)-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

PDB-9vmn:
Cryo-EM structure of the a-KG-OXGR1-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

PDB-9vmo:
Cryo-EM structure of the ITA-OXGR1-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

PDB-9vmp:
Cryo-EM structure of the A-1-OXGR1-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

PDB-9vo2:
Cryo-EM structure of the OXGR1(CA)-Gq complex
Method: single particle / : Tang XJ, Sun JP, Guo LL, Li J, Deng ZL, Xiao WQ, Zhu Y, Zhu KK

EMDB-56294:
Plasmodium falciparum gametocyte microtubule with 15 protofilaments determined in situ
Method: subtomogram averaging / : Ferreira JL

EMDB-64601:
The Structural Basis of ClpP1 in Pseudomonas plecoglossicida
Method: single particle / : Jingjie C

PDB-9uxt:
The Structural Basis of ClpP1 in Pseudomonas plecoglossicida
Method: single particle / : Jingjie C

EMDB-67153:
LolCDE in complex with SMT-738_3
Method: single particle / : Dong CJ, Li HT

PDB-9xro:
LolCDE in complex with SMT-738_3
Method: single particle / : Dong CJ, Li HT

EMDB-64577:
local ATPase-NCP density map of the ncBAF-nucleosome complex in the ADP-BeFx-bound state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

PDB-9ux9:
local ATPase-NCP structure of the ncBAF-nucleosome complex in the ADP-BeFx-bound state
Method: single particle / : Sun F, Zou B, Li H, Xu C, Luo Q, Wang C, Xu P, Pei D, Chen J, Qin D, Zhang Y, He J

EMDB-63693:
At S1+tRNA trimer
Method: single particle / : Zhang SS

PDB-9m7u:
At S1+tRNA trimer
Method: single particle / : Zhang SS

EMDB-62620:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q, Xia N

EMDB-65522:
Cryo-EM structure of a 1C4 SpyTag-SpyCatcher mi3 nanoparticle
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-65523:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9kwy:
Cryo-EM structure of SARS-CoV-2 RBD in complex with ACE2 and mAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

PDB-9w14:
Cryo-EM structure of SARS-CoV-2 WT spike protein in complex with nAb 1C4
Method: single particle / : Sun H, Jiang Y, Li S, Zheng Q

EMDB-63690:
Structure of flagellar hook at 3.18 angstroms resolution,conformation 1.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

PDB-9m7q:
Structure of flagellar hook at 3.18 angstroms resolution,conformation 1.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

EMDB-63732:
Structure of flagellar hook at 3.50 angstroms resolution,conformation 3.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

PDB-9m9f:
Structure of flagellar hook at 3.50 angstroms resolution,conformation 3.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

EMDB-63680:
Structure of flagellar hook at 3.14 angstroms resolution,conformation 2.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

PDB-9m7b:
Structure of flagellar hook at 3.14 angstroms resolution,conformation 2.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

EMDB-63227:
Structure of human NLRP14-UHRF1 complex
Method: single particle / : Qi Q, Chi P, Liu S, Lu Y, Li J, Wang X, Jiang Y, Deng D

PDB-9ln6:
Structure of human NLRP14-UHRF1 complex
Method: single particle / : Qi Q, Chi P, Liu S, Lu Y, Li J, Li J, Wang X, Jiang Y, Deng D

EMDB-75890:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75895:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75896:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75898:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75899:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-66203:
Structure of dimeric mouse NLRP14-KDM2A-SKP1 complex
Method: single particle / : Liu S, Jiao H, Yan L, Qi Q, Chi P, Lu Y, Li JH, Li JL, Ju S, Wang X, Hu H, Deng D

EMDB-66204:
Structure of mouse NLRP14-KDM2A-SKP1 complex
Method: single particle / : Liu S, Jiao H, Yan L, Qi Q, Chi P, Lu Y, Li JH, Li JL, Ju S, Wang X, Hu H, Deng D

PDB-9wsq:
Structure of dimeric mouse NLRP14-KDM2A-SKP1 complex
Method: single particle / : Liu S, Jiao H, Yan L, Qi Q, Chi P, Lu Y, Li JH, Li JL, Ju S, Wang X, Hu H, Deng D

PDB-9wsr:
Structure of mouse NLRP14-KDM2A-SKP1 complex
Method: single particle / : Liu S, Jiao H, Yan L, Qi Q, Chi P, Lu Y, Li JH, Li JL, Ju S, Wang X, Hu H, Deng D

EMDB-70224:
amyloid fibril of recombinant full-length 2N4R tau complexed with unfractionated mouse liver RNA and seeded by Alzheimer's disease tau fibrils
Method: helical / : Jiang YX, Sawaya MR, Abskharon R, Ge P, Boyer DR, Eisenberg DS

EMDB-70227:
amyloid fibril of recombinant full-length 2N4R tau complexed with mouse liver 18S ribosomal RNA
Method: helical / : Jiang YX, Sawaya MR, Abskharon R, Ge P, Boyer DR, Eisenberg DS

PDB-9o8e:
amyloid fibril of recombinant full-length 2N4R tau complexed with unfractionated mouse liver RNA and seeded by Alzheimer's disease tau fibrils
Method: helical / : Jiang YX, Sawaya MR, Abskharon R, Ge P, Boyer DR, Eisenberg DS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more