[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 94 items for (author: eek & p)

EMDB-42981:
Prefusion-stabilized Respirovirus type 3 Fusion protein
Method: single particle / : Johnson NV, McLellan JS

PDB-8v5a:
Prefusion-stabilized Respirovirus type 3 Fusion protein
Method: single particle / : Johnson NV, McLellan JS

EMDB-41839:
Cryo-EM structure of yeast SWR1C subunit Swc5 bound to the nucleosome, 3D class 0
Method: single particle / : Eek P, Tan S

EMDB-41851:
Cryo-EM structure of yeast SWR1C subunit Swc5 bound to the nucleosome, 3D class 1
Method: single particle / : Eek P, Tan S

EMDB-41852:
Cryo-EM structure of yeast SWR1C subunit Swc5 bound to the nucleosome, 3D class 2
Method: single particle / : Eek P, Tan S

EMDB-41853:
Cryo-EM structure of yeast SWR1C subunit Swc5 bound to the nucleosome, 3D class 4
Method: single particle / : Eek P, Tan S

EMDB-41423:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41424:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41425:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41777:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41778:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-41779:
Map from local refinement (focused on CRBN) of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnp:
Cryo-EM structure of DDB1dB:CRBN:Pomalidomide:SD40
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnq:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 1
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

PDB-8tnr:
Cryo-EM structure of DDB1dB:CRBN:PT-179:SD40, conformation 2
Method: single particle / : Roy Burman SS, Hunkeler M, Fischer ES

EMDB-16001:
apo PrgB
Method: single particle / : Lassinantti L, Berntsson RP-A

EMDB-16002:
PrgB bound to DNA
Method: single particle / : Lassinantti L, Berntsson RP-A

EMDB-16730:
Cryo-EM structure of complement C5 in complex with nanobodies UNbC5-1 and UNbC5-2
Method: single particle / : De la O Becerra KI, Gros P

PDB-8cml:
Cryo-EM structure of complement C5 in complex with nanobodies UNbC5-1 and UNbC5-2
Method: single particle / : De la O Becerra KI, Gros P

EMDB-16433:
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Method: single particle / : Sharma M, Meek RW, Armstrong Z, Blaza JN, Alhifthi A, Li J, Goddard-Borger ED, Williams SJ, Davies GJ

PDB-8c54:
Cryo-EM structure of NADH bound SLA dehydrogenase RlGabD from Rhizobium leguminosarum bv. trifolii SRD1565
Method: single particle / : Sharma M, Meek RW, Armstrong Z, Blaza JN, Alhifthi A, Li J, Goddard-Borger ED, Williams SJ, Davies GJ

EMDB-40789:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-40790:
Map focused on acidic patch BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

EMDB-40791:
Overall map of BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI

PDB-8svf:
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Method: single particle / : Thomas JF, Valencia-Sanchez MI, Armache KJ

EMDB-27627:
Structure of p110 gamma bound to the Ras inhibitory nanobody NB7
Method: single particle / : Burke JE, Nam SE, Rathinaswamy MK, Yip CK

PDB-8dp0:
Structure of p110 gamma bound to the Ras inhibitory nanobody NB7
Method: single particle / : Burke JE, Nam SE, Rathinaswamy MK, Yip CK

EMDB-16145:
Cryo-EM structure of NHEJ supercomplex(trimer)
Method: single particle / : Hardwick SW, Chaplin AK

PDB-8bot:
Cryo-EM structure of NHEJ supercomplex(trimer)
Method: single particle / : Hardwick SW, Chaplin AK

EMDB-15022:
CryoEM structure of Ku heterodimer bound to DNA, PAXX and XLF
Method: single particle / : Hardwick SW, Kefala-Stavridi A, Chirgadze DY, Blundell TL, Chaplin AK

EMDB-16044:
DNA-PK Ku80 mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

EMDB-16070:
DNA-PK XLF mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

EMDB-16074:
DNA-PK Ku80 mediated dimer bound to PAXX and XLF
Method: single particle / : Hardwick SW, Chaplin AK

PDB-7zyg:
CryoEM structure of Ku heterodimer bound to DNA, PAXX and XLF
Method: single particle / : Hardwick SW, Kefala-Stavridi A, Chirgadze DY, Blundell TL, Chaplin AK

PDB-8bh3:
DNA-PK Ku80 mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

PDB-8bhv:
DNA-PK XLF mediated dimer bound to PAXX
Method: single particle / : Hardwick SW, Chaplin AK

PDB-8bhy:
DNA-PK Ku80 mediated dimer bound to PAXX and XLF
Method: single particle / : Hardwick SW, Chaplin AK

EMDB-14995:
CryoEM structure of Ku heterodimer bound to DNA and PAXX
Method: single particle / : Hardwick SW, Kefala-Stavridi A, Chirgadze DY, Blundell TL, Chaplin AK

PDB-7zwa:
CryoEM structure of Ku heterodimer bound to DNA and PAXX
Method: single particle / : Hardwick SW, Kefala-Stavridi A, Chirgadze DY, Blundell TL, Chaplin AK

EMDB-27500:
EBNA1 DNA binding domain (DBD) (458-617)+2 repeats of family repeat (FR) region
Method: single particle / : Mei Y, Lieberman PM, Murakami K

PDB-8dlf:
EBNA1 DNA binding domain (DBD) (458-617)+2 repeats of family repeat (FR) region
Method: single particle / : Mei Y, Lieberman PM, Murakami K

EMDB-25406:
Cryo-EM structure of pioneer factor Cbf1 bound to the nucleosome
Method: single particle / : Eek P, Tan S

PDB-7ssa:
Cryo-EM structure of pioneer factor Cbf1 bound to the nucleosome
Method: single particle / : Eek P, Tan S

EMDB-14710:
Polymerase module of CPF in complex with Mpe1 and a pre-cleaved CYC1 RNA
Method: single particle / : Rodriguez-Molina JB, Passmore LA

EMDB-14711:
Polymerase module of yeast CPF in complex with the yPIM of Cft2
Method: single particle / : Rodriguez-Molina JB, Passmore LA

EMDB-14712:
Polymerase module of yeast CPF in complex with Mpe1, the yPIM of Cft2 and the pre-cleaved CYC1 RNA
Method: single particle / : Rodriguez-Molina JB, Passmore LA

PDB-7zgp:
Polymerase module of CPF in complex with Mpe1 and a pre-cleaved CYC1 RNA
Method: single particle / : Rodriguez-Molina JB, Passmore LA

PDB-7zgq:
Polymerase module of yeast CPF in complex with the yPIM of Cft2
Method: single particle / : Rodriguez-Molina JB, Passmore LA

PDB-7zgr:
Polymerase module of yeast CPF in complex with Mpe1, the yPIM of Cft2 and the pre-cleaved CYC1 RNA
Method: single particle / : Rodriguez-Molina JB, Passmore LA

EMDB-25110:
CryoEM map of DNA-PK complex VIb with AMPPNP
Method: single particle / : Chen X, Liu L, Li J, Yang W, Gellert M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more