[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 81 items for (author: arpin & d)

EMDB-71002:
Flavobacterium johnsoniae 30S ribosomal subunit.
Method: single particle / : Ortega J, Arpin D

EMDB-71035:
Flavobacterium johnsoniae 30S ribosomal subunit, ZAM64 mutant.
Method: single particle / : Ortega J, Arpin D

EMDB-71052:
Flavobacterium johnsoniae 70S initiation complex with Shine-Dalgarno-less mRNA.
Method: single particle / : Ortega J, Arpin D

EMDB-71060:
Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 1.
Method: single particle / : Ortega J, Arpin D

EMDB-71061:
Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 2.
Method: single particle / : Ortega J, Arpin D

EMDB-71069:
Flavobacterium johnsoniae ZAM64 mutant 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence.
Method: single particle / : Ortega J, Arpin D

EMDB-71567:
Flavobacterium johnsoniae bS6 C-terminal deletion mutant 70S ribosome.
Method: single particle / : Ortega J, Arpin D

EMDB-71568:
Flavobacterium johnsoniae bS18 M7 mutant 70S ribosome.
Method: single particle / : Ortega J, Arpin D

EMDB-71569:
Flavobacterium johnsoniae bS18 M5 mutant 70S ribosome.
Method: single particle / : Ortega J, Arpin D

EMDB-74034:
Flavobacterium johnsoniae 30S ribosomal subunit.
Method: single particle / : Ortega J, Arpin D

PDB-9oy8:
Flavobacterium johnsoniae 30S ribosomal subunit.
Method: single particle / : Ortega J, Arpin D

PDB-9oyv:
Flavobacterium johnsoniae 30S ribosomal subunit, ZAM64 mutant.
Method: single particle / : Ortega J, Arpin D

PDB-9oz9:
Flavobacterium johnsoniae 70S initiation complex with Shine-Dalgarno-less mRNA.
Method: single particle / : Ortega J, Arpin D

PDB-9ozn:
Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 1.
Method: single particle / : Ortega J, Arpin D

PDB-9ozz:
Flavobacterium johnsoniae 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence. State 2.
Method: single particle / : Ortega J, Arpin D

PDB-9p0e:
Flavobacterium johnsoniae ZAM64 mutant 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence.
Method: single particle / : Ortega J, Arpin D

PDB-9zcd:
Flavobacterium johnsoniae 30S ribosomal subunit.
Method: single particle / : Ortega J, Arpin D

EMDB-71096:
44.5SYsxC particles isolated from YsxC-depleted cells. Class 1.
Method: single particle / : Ortega J, Seffouh A

EMDB-71098:
44.5SYsxC particles isolated from YsxC-depleted cells. Class 3.
Method: single particle / : Ortega J, Seffouh A

EMDB-71099:
44.5SYsxC particles isolated from YsxC-depleted cells. Class 2.
Method: single particle / : Ortega J, Seffouh A

EMDB-71102:
YsxC-GMPPNP treated 44.5SYsxC particles. Class 2.
Method: single particle / : Ortega J, Seffouh A

EMDB-71103:
YsxC-GMPPNP treated 44.5SYsxC particles. Class 3.
Method: single particle / : Ortega J, Seffouh A

EMDB-71104:
YsxC-GTP treated 44.5SYsxC particles. Class 1.
Method: single particle / : Ortega J, Seffouh A

EMDB-71105:
YsxC-GTP treated 44.5SYsxC particles. Class 2.
Method: single particle / : Ortega J, Seffouh A

EMDB-71106:
YsxC-GTP treated 44.5SYsxC particles. Class 3
Method: single particle / : Ortega J, Seffouh A

EMDB-71107:
YsxC-GTP treated 44.5SYsxC particles. Class 4.
Method: single particle / : Ortega J, Seffouh A

EMDB-71109:
44.5SYsxC particles after incubation at 37 oC for 15 min. Class 1
Method: single particle / : Ortega J, Seffouh A

EMDB-71110:
44.5SYsxC particles after incubation at 37 oC for 15 min. Class 2.
Method: single particle / : Ortega J, Seffouh A

EMDB-71111:
44.5SYsxC particles after incubation at 37 oC for 15 min. Class 3.
Method: single particle / : Ortega J, Seffouh A

EMDB-71238:
YsxC-GMPPNP treated 44.5SYsxC particles. Class 1.
Method: single particle / : Ortega J, Seffouh A

EMDB-71268:
YsxC-GTP treated 44.5SYsxC particles. Class 5.
Method: single particle / : Ortega J, Seffouh A

PDB-9p38:
YsxC-GMPPNP treated 44.5SYsxC particles. Class 1.
Method: single particle / : Ortega J, Seffouh A

PDB-9p4i:
YsxC-GTP treated 44.5SYsxC particles. Class 5.
Method: single particle / : Ortega J, Seffouh A

EMDB-43920:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 1
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43922:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 2
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43933:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 3
Method: single particle / : Ortega J, Arpin D, Zhu H, Fredrick KL

EMDB-43934:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 4
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43936:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 5
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43937:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 6
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43938:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 7
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43939:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 8
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43940:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 9
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43941:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 10
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43942:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class 11
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43943:
50S Assembly intermediate from SA22 strain with bL38 depleted uL6 over expression. Class M
Method: single particle / : Ortega J, Zhu H, Arpin D, Fredrick K

EMDB-43944:
50S Assembly intermediate from SA08 strain with bL38 depletion. Class 1
Method: single particle / : Ortega J, Arpin D, Zhu H, Fredrick KL

EMDB-43945:
50S Assembly intermediate from SA08 strain with bL38 depletion. Class 2
Method: single particle / : Ortega J, Arpin D, Zhu H, Fredrick KL

EMDB-43946:
50S Assembly intermediate from SA08 strain with bL38 depletion. Class 3
Method: single particle / : Ortega J, Arpin D, Zhu H, Fredrick KL

EMDB-43947:
50S Assembly intermediate from SA08 strain with bL38 depletion. Class 4
Method: single particle / : Ortega J, Arpin D, Zhu H, Fredrick KL

EMDB-43948:
50S Assembly intermediate from SA08 strain with bL38 depletion. Class 5
Method: single particle / : Ortega J, Arpin D, Zhu H, Fredrick KL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more