National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease
DK027044
United States
Citation
Journal: Nat Commun / Year: 2019 Title: Structural basis for the clamping and Ca activation of SNARE-mediated fusion by synaptotagmin. Authors: Kirill Grushin / Jing Wang / Jeff Coleman / James E Rothman / Charles V Sindelar / Shyam S Krishnakumar / Abstract: Synapotagmin-1 (Syt1) interacts with both SNARE proteins and lipid membranes to synchronize neurotransmitter release to calcium (Ca) influx. Here we report the cryo-electron microscopy structure of ...Synapotagmin-1 (Syt1) interacts with both SNARE proteins and lipid membranes to synchronize neurotransmitter release to calcium (Ca) influx. Here we report the cryo-electron microscopy structure of the Syt1-SNARE complex on anionic-lipid containing membranes. Under resting conditions, the Syt1 C2 domains bind the membrane with a magnesium (Mg)-mediated partial insertion of the aliphatic loops, alongside weak interactions with the anionic lipid headgroups. The C2B domain concurrently interacts the SNARE bundle via the 'primary' interface and is positioned between the SNAREpins and the membrane. In this configuration, Syt1 is projected to sterically delay the complete assembly of the associated SNAREpins and thus, contribute to clamping fusion. This Syt1-SNARE organization is disrupted upon Ca-influx as Syt1 reorients into the membrane, likely displacing the attached SNAREpins and reversing the fusion clamp. We thus conclude that the cation (Mg/Ca) dependent membrane interaction is a key determinant of the dual clamp/activator function of Synaptotagmin-1.
History
Deposition
Oct 17, 2018
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Header (metadata) release
Nov 14, 2018
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Map release
Apr 24, 2019
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Update
Nov 6, 2019
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Current status
Nov 6, 2019
Processing site: RCSB / Status: Released
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Structure visualization
Movie
Surface view with section colored by density value
Entire : Synaptotagmin 1 C2AB in a complex with the SNAREpin assembly boun...
Entire
Name: Synaptotagmin 1 C2AB in a complex with the SNAREpin assembly bound to the negatively charged phospholipid nanotube in presence of Mg2+.
Components
Complex: Synaptotagmin 1 C2AB in a complex with the SNAREpin assembly bound to the negatively charged phospholipid nanotube in presence of Mg2+.
Protein or peptide: Synaptotagmin 1
Protein or peptide: Vesicle-associated membrane protein 2
Protein or peptide: Syntaxin-1A
Protein or peptide: Synaptosomal-associated protein 25
Protein or peptide: Synaptosomal-associated protein 25
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Supramolecule #1: Synaptotagmin 1 C2AB in a complex with the SNAREpin assembly boun...
Supramolecule
Name: Synaptotagmin 1 C2AB in a complex with the SNAREpin assembly bound to the negatively charged phospholipid nanotube in presence of Mg2+. type: complex / ID: 1 / Parent: 0 / Macromolecule list: all
Type of model: INSILICO MODEL / In silico model: Featureless hollow cylinder
Final angle assignment
Type: NOT APPLICABLE
FSC plot (resolution estimation)
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Atomic model buiding 1
Refinement
Protocol: RIGID BODY FIT
Output model
PDB-6mti: Synaptotagmin-1 C2A, C2B domains and SNARE-pin proteins (5CCI) individually docked into Cryo-EM map of C2AB-SNARE complexes helically organized on lipid nanotube surface in presence of Mg2+
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