+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-24482 | ||||||||||||||||||
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Title | Complex III2 from Candida albicans, inhibitor free | ||||||||||||||||||
Map data | Candida albicans CIII2, inhibitor free | ||||||||||||||||||
Sample |
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Function / homology | Function and homology information regulation of filamentous growth / matrix side of mitochondrial inner membrane / protein processing involved in protein targeting to mitochondrion / : / mitochondrial respiratory chain complex III assembly / quinol-cytochrome-c reductase / ubiquinol-cytochrome-c reductase activity / mitochondrial electron transport, ubiquinol to cytochrome c / mitochondrial crista / heterochromatin ...regulation of filamentous growth / matrix side of mitochondrial inner membrane / protein processing involved in protein targeting to mitochondrion / : / mitochondrial respiratory chain complex III assembly / quinol-cytochrome-c reductase / ubiquinol-cytochrome-c reductase activity / mitochondrial electron transport, ubiquinol to cytochrome c / mitochondrial crista / heterochromatin / aerobic respiration / metalloendopeptidase activity / 2 iron, 2 sulfur cluster binding / electron transfer activity / oxidoreductase activity / heme binding / mitochondrion / membrane / metal ion binding / plasma membrane Similarity search - Function | ||||||||||||||||||
Biological species | Candida albicans SC5314 (yeast) / Yeast (yeast) | ||||||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.0 Å | ||||||||||||||||||
Authors | Di Trani JM / Rubinstein JL | ||||||||||||||||||
Funding support | Canada, Sweden, 5 items
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Citation | Journal: Structure / Year: 2022 Title: Rieske head domain dynamics and indazole-derivative inhibition of Candida albicans complex III. Authors: Justin M Di Trani / Zhongle Liu / Luke Whitesell / Peter Brzezinski / Leah E Cowen / John L Rubinstein / Abstract: Electron transfer between respiratory complexes drives transmembrane proton translocation, which powers ATP synthesis and membrane transport. The homodimeric respiratory complex III (CIII) oxidizes ...Electron transfer between respiratory complexes drives transmembrane proton translocation, which powers ATP synthesis and membrane transport. The homodimeric respiratory complex III (CIII) oxidizes ubiquinol to ubiquinone, transferring electrons to cytochrome c and translocating protons through a mechanism known as the Q cycle. The Q cycle involves ubiquinol oxidation and ubiquinone reduction at two different sites within each CIII monomer, as well as movement of the head domain of the Rieske subunit. We determined structures of Candida albicans CIII by cryoelectron microscopy (cryo-EM), revealing endogenous ubiquinone and visualizing the continuum of Rieske head domain conformations. Analysis of these conformations does not indicate cooperativity in the Rieske head domain position or ligand binding in the two CIIIs of the CIII dimer. Cryo-EM with the indazole derivative Inz-5, which inhibits fungal CIII and is fungicidal when administered with fungistatic azole drugs, showed that Inz-5 inhibition alters the equilibrium of Rieske head domain positions. | ||||||||||||||||||
History |
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-Structure visualization
Movie |
Movie viewer |
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Structure viewer | EM map: SurfViewMolmilJmol/JSmol |
Supplemental images |
-Downloads & links
-EMDB archive
Map data | emd_24482.map.gz | 86.1 MB | EMDB map data format | |
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Header (meta data) | emd-24482-v30.xml emd-24482.xml | 20.5 KB 20.5 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_24482_fsc.xml | 10.1 KB | Display | FSC data file |
Images | emd_24482.png | 76.1 KB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-24482 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-24482 | HTTPS FTP |
-Validation report
Summary document | emd_24482_validation.pdf.gz | 480.5 KB | Display | EMDB validaton report |
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Full document | emd_24482_full_validation.pdf.gz | 480.1 KB | Display | |
Data in XML | emd_24482_validation.xml.gz | 11.8 KB | Display | |
Data in CIF | emd_24482_validation.cif.gz | 15.6 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-24482 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-24482 | HTTPS FTP |
-Related structure data
Related structure data | 7rjaMC 7rjbC 7rjcC 7rjdC 7rjeC C: citing same article (ref.) M: atomic model generated by this map |
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Similar structure data |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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Related items in Molecule of the Month |
-Map
File | Download / File: emd_24482.map.gz / Format: CCP4 / Size: 91.1 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Annotation | Candida albicans CIII2, inhibitor free | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 1.03 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
-Sample components
+Entire : Respiratory complex III2 from Candida albicans
+Supramolecule #1: Respiratory complex III2 from Candida albicans
+Macromolecule #1: Ubiquinol--cytochrome-c reductase subunit
+Macromolecule #2: Cytochrome b
+Macromolecule #3: Ubiquinol--cytochrome-c reductase catalytic subunit
+Macromolecule #4: Cytochrome b-c1 complex subunit 7
+Macromolecule #5: Ubiquinol--cytochrome-c reductase subunit 8
+Macromolecule #6: Ubiquinol--cytochrome-c reductase subunit 6
+Macromolecule #7: Ubiquinol--cytochrome-c reductase subunit 9
+Macromolecule #8: Cytochrome b-c1 complex subunit Rieske, mitochondrial
+Macromolecule #9: Cytochrome b-c1 complex subunit 2, mitochondrial
+Macromolecule #10: PROTOPORPHYRIN IX CONTAINING FE
+Macromolecule #11: UBIQUINONE-10
+Macromolecule #12: HEME C
+Macromolecule #13: FE2/S2 (INORGANIC) CLUSTER
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.4 |
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Vitrification | Cryogen name: ETHANE-PROPANE |
-Electron microscopy
Microscope | TFS KRIOS |
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Image recording | Film or detector model: FEI FALCON IV (4k x 4k) / Average electron dose: 42.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |